View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_144 (Length: 275)
Name: NF0812_low_144
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_144 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 38937263 - 38937018
Alignment:
| Q |
1 |
acaataataacttggatggagaattgccacgcacaatttctcatctaacttccttaacttatttttccgtgttcaccaataacttctcaggtaacatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38937263 |
acaataataacttggatggagaattgccacgcacaatttctcatctaacttccttaacttatttttccgtgttcaccaataacttctcaggtaacatttc |
38937164 |
T |
|
| Q |
101 |
cagagactttggaaagaatagtccttctttgactcatgtctacttttcaaacaatagtttctcaggagaacttccttctgacatgtgcaatggcctaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38937163 |
cagagactttggaaagaatagtccttctttgactcatgtctacttttcaaacaatagtttctcaggagaacttccttctgacatgtgcaatggcctaaaa |
38937064 |
T |
|
| Q |
201 |
ctacttgttttggcagtaaataacaacagcttttcagggtcattgc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38937063 |
ctacttgttttggcagtaaataacaacagcttttcagggtcattgc |
38937018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 39305689 - 39305934
Alignment:
| Q |
1 |
acaataataacttggatggagaattgccacgcacaatttctcatctaacttccttaacttatttttccgtgttcaccaataacttctcaggtaacatttc |
100 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||||||| |||||| ||||||||||||||||||||||| | |||||| |
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| T |
39305689 |
acaataataacttggaaggagaattgccagacacaattgctcatctaactgccttaacttctttttctgtgttcaccaataacttctcaggaagcatttc |
39305788 |
T |
|
| Q |
101 |
cagagactttggaaagaatagtccttctttgactcatgtctacttttcaaacaatagtttctcaggagaacttccttctgacatgtgcaatggcctaaaa |
200 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| || |
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| T |
39305789 |
cagagattttggaaagaacagtccttctttgactcatgtctacttttcaaacaatagtttctcaggagaacttccttctgaattatgcagtggccacaat |
39305888 |
T |
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| Q |
201 |
ctacttgttttggcagtaaataacaacagcttttcagggtcattgc |
246 |
Q |
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||| |||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
39305889 |
ctagttgttttggccgtaaataacaacagcttttcaggatcattgc |
39305934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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