View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_146 (Length: 270)

Name: NF0812_low_146
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_146
NF0812_low_146
[»] chr7 (7 HSPs)
chr7 (1-260)||(43520296-43520560)
chr7 (12-93)||(43520263-43520344)
chr7 (8-101)||(1044006-1044099)
chr7 (8-99)||(1044030-1044121)
chr7 (79-204)||(1043859-1043985)
chr7 (62-145)||(13345350-13345434)
chr7 (14-62)||(27257062-27257110)
[»] chr5 (2 HSPs)
chr5 (8-193)||(3666564-3666752)
chr5 (59-151)||(36949478-36949570)
[»] chr6 (3 HSPs)
chr6 (8-218)||(2862730-2862940)
chr6 (8-151)||(28964079-28964224)
chr6 (114-218)||(2882139-2882243)
[»] chr2 (4 HSPs)
chr2 (59-196)||(22845050-22845187)
chr2 (8-48)||(13290778-13290818)
chr2 (69-215)||(17452905-17453056)
chr2 (60-183)||(25375550-25375673)
[»] scaffold0211 (2 HSPs)
scaffold0211 (8-108)||(22997-23099)
scaffold0211 (8-99)||(23019-23112)
[»] chr1 (4 HSPs)
chr1 (69-154)||(16836613-16836698)
chr1 (79-204)||(27308216-27308342)
chr1 (77-183)||(1067142-1067248)
chr1 (122-260)||(16633459-16633598)
[»] chr8 (4 HSPs)
chr8 (10-65)||(8166137-8166192)
chr8 (8-62)||(14036287-14036341)
chr8 (13-65)||(40941119-40941171)
chr8 (120-148)||(42562133-42562161)
[»] chr3 (3 HSPs)
chr3 (13-76)||(30857276-30857339)
chr3 (8-62)||(53502369-53502423)
chr3 (10-43)||(50708134-50708167)
[»] scaffold0009 (1 HSPs)
scaffold0009 (8-62)||(71939-71993)
[»] chr4 (4 HSPs)
chr4 (28-87)||(32545673-32545734)
chr4 (8-62)||(34561249-34561303)
chr4 (13-65)||(8876143-8876195)
chr4 (13-65)||(8879053-8879105)
[»] scaffold0041 (1 HSPs)
scaffold0041 (14-62)||(34925-34973)


Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 43520296 - 43520560
Alignment:
Q  1 gtatttgatctgaaatattttagtactcaatctaaaatattttggtatttgatctgaaatattttagcactcaatcaaatatattttggtactcaatatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43520296 gtatttgatctgaaatattttagtactcaatctaaaatattttgatacttgatttgaaatattttagcactcaatcaaatatattttggtactcaatatg 43520395  T
Q  101 atacatttggtattagatataatatgtgagttacttgttctcaaagtttctt-----atagaatagttgtggattttctctttaaatacatagctcacat 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||    
T  43520396 atacatttggtattagatataatatgtgagttacttgttctcaaagtttcttatagaatagaatagttgtggattttctctttaaatacatagctcacat 43520495  T
Q  196 atttcattccatataccaaaaaaggtttttgagttatcaatactttttcttctcttctccctttg 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43520496 atttcattccatataccaaaaaaggtttttgagttatcaatactttttcttctcttccccctttg 43520560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 43520263 - 43520344
Alignment:
Q  12 gaaatattttagtactcaatctaaaatattttggtatttgatctgaaatattttagcactcaatcaaatatattttggtact 93  Q
    |||||||||| || | |||||||||||||| ||||||||||||||||||||||||| |||||||| || |||||||| ||||    
T  43520263 gaaatattttggttcgcaatctaaaatattatggtatttgatctgaaatattttagtactcaatctaaaatattttgatact 43520344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 1044099 - 1044006
Alignment:
Q  8 atctgaaatattttagtactcaatctaaaatattttggtatttgatctgaaatattttagcactcaatcaaatatattttggtactcaatatga 101  Q
    |||| ||||||||| |||  |||||||| ||||||||||| |  || | | ||||||| |||||||||  ||||| ||||||||||||||||||    
T  1044099 atctaaaatattttggtatgcaatctaatatattttggtactcaatataatatatttttgcactcaatataatatcttttggtactcaatatga 1044006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 1044121 - 1044030
Alignment:
Q  8 atctgaaatattttagtactcaatctaaaatattttggtatttgatctgaaatattttagcactcaatcaaatatattttggtactcaatat 99  Q
    ||||||||||||||  | | |||||||||||||||||||||   |||| | ||||||| | |||||||  |||||||||| | |||||||||    
T  1044121 atctgaaatattttcatgcacaatctaaaatattttggtatgcaatctaatatattttggtactcaatataatatatttttgcactcaatat 1044030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 1043985 - 1043859
Alignment:
Q  79 atatattttggtactcaatatgataca-tttggtattagatataatatgtgagttacttgttctcaaagtttcttatagaatagttgtggattttctctt 177  Q
    |||||||||||||||||||  || | | ||| ||| ||||| ||||| |||| |||||||||  |||||||||| | | | || ||||| |||||||||     
T  1043985 atatattttggtactcaatgcgagatatttttgtactagatctaatacgtgaattacttgtttccaaagtttctcacatattaattgtgaattttctcta 1043886  T
Q  178 taaatacatagctcacatatttcattc 204  Q
    |||||| | |||| ||||| |||||||    
T  1043885 taaataaagagctgacataattcattc 1043859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 145
Target Start/End: Complemental strand, 13345434 - 13345350
Alignment:
Q  62 ttttagcactcaatcaaatatattttggtactcaatatgatacatttggt-attagatataatatgtgagttacttgttctcaaa 145  Q
    |||| |||||||||  ||||||||||| |||||||||| ||| ||||  | ||| ||| |||||||||| |||||||||| ||||    
T  13345434 ttttcgcactcaatataatatattttgatactcaatataatatatttcttaatttgatgtaatatgtgaattacttgttcccaaa 13345350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 27257110 - 27257062
Alignment:
Q  14 aatattttagtactcaatctaaaatattttggtatttgatctgaaatat 62  Q
    |||||||||| || |||||||||||||||| |||  |||||||||||||    
T  27257110 aatattttagaacccaatctaaaatattttagtacatgatctgaaatat 27257062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 3666752 - 3666564
Alignment:
Q  8 atctgaaatattttagtactcaatctaaaatattttggtatttgatctgaaatat--tttagcactcaatcaaatatattttggtactcaatatgataca 105  Q
    |||||||||||||  |||  |||||||| ||||||| ||| ||||||| ||||||  ||| | ||  |||  |||||||||| ||||||||||| ||| |    
T  3666752 atctgaaatatttgggtaggcaatctaatatattttagtacttgatctaaaatatattttggtacataatataatatatttttgtactcaatataatata 3666653  T
Q  106 tttg-gtattagatataatatgtgagttacttgttctcaaagtttcttatagaatagttgtggattttctctttaaatacatagctcac 193  Q
    |||  ||| ||||| |||||||||| ||||||||||||||||||||| |   | |||||||| ||||||||| |||||| | |||||||    
T  3666652 tttttgtactagatctaatatgtgaattacttgttctcaaagtttctcacttattagttgtgaattttctctataaatagagagctcac 3666564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 36949570 - 36949478
Alignment:
Q  59 atattttagcactcaatcaaatatattttggtactcaa-tatgatacatttggtattagatataatatgtgagttacttgttctcaaagtttct 151  Q
    ||||||| | ||||||| |||||||||||||||||||| || ||||  ||| ||| ||||| |||||||||| |||||||||| ||||||||||    
T  36949570 atatttttgtactcaataaaatatattttggtactcaattaagata-tttttgtactagatctaatatgtgaattacttgttcccaaagtttct 36949478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 2862730 - 2862940
Alignment:
Q  8 atctgaaatattttagtactcaatctaaaatattttggtatttgatctgaaatat--tttagcactcaatcaaatatattttggtactcaatatgataca 105  Q
    |||||||||||||| ||| ||||| ||| |||||||||||||| || ||||||||  ||| | |||||||  | |||||||| ||||||||| ||  | |    
T  2862730 atctgaaatattttcgtattcaatataatatattttggtattt-atatgaaatatatttttgtactcaat--agtatatttttgtactcaatttgcaata 2862826  T
Q  106 tttgg-tattagatataatatgtgagttacttgttctcaaagtttcttatagaatagttgtggattttctctttaaatacatagctcacatatttcattc 204  Q
    |||   || ||||| |||||||||| |||||||||| ||||||| |  | | | || ||||| ||||||||| |||||| | |||||||||| |||||||    
T  2862827 tttttatactagatctaatatgtgaattacttgttcccaaagttgcacacatactatttgtgaattttctctataaatagagagctcacatagttcattc 2862926  T
Q  205 catataccaaaaaa 218  Q
    |||| ||| |||||    
T  2862927 catacaccgaaaaa 2862940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 28964079 - 28964224
Alignment:
Q  8 atctgaaatattttagtactcaatctaaaatattttggtatttgatctgaaatat-tttagcactcaatcaaatatattttggtactcaatatgataca- 105  Q
    |||||||||||||| | |  |||||||  |||||||||||  ||||||||||||| ||| | |||||||   ||||||||||||||||||| ||| | |     
T  28964079 atctgaaatattttggcatgcaatctattatattttggtacatgatctgaaatatattttgtactcaatatgatatattttggtactcaatttgagatat 28964178  T
Q  106 tttggtattagatataatatgtgagttacttgttctcaaagtttct 151  Q
    ||| ||| ||||| |||||| ||| ||| |||||| ||||||||||    
T  28964179 ttttgtactagatctaatatttgaattatttgttcccaaagtttct 28964224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 2882139 - 2882243
Alignment:
Q  114 tagatataatatgtgagttacttgttctcaaagtttcttatagaatagttgtggattttctctttaaatacatagctcacatatttcattccatatacca 213  Q
    ||||| |||||||||| |||||||||| |||| || |  | | | || ||||| ||||||||| ||||| || |||||||||| ||||||||||| |||     
T  2882139 tagatctaatatgtgaattacttgttcccaaatttgcacacatactatttgtgaattttctctataaattcagagctcacatagttcattccatacaccg 2882238  T
Q  214 aaaaa 218  Q
    |||||    
T  2882239 aaaaa 2882243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 196
Target Start/End: Complemental strand, 22845187 - 22845050
Alignment:
Q  59 atattttagcactcaatcaaatatattttggtactcaatatgataca-tttggtattagatataatatgtgagttacttgttctcaaagtttcttataga 157  Q
    ||||||| | |||||||  |||||||||||||||||||| ||| | | ||| ||| ||||| |||||||||| |||||||||| |||||||||| |   |    
T  22845187 atatttttgtactcaatataatatattttggtactcaat-tgagatatttttgtactagatctaatatgtgaattacttgttcccaaagtttctcactta 22845089  T
Q  158 atagttgtggattttctctttaaatacatagctcacata 196  Q
     |||||||| ||||||||| |||||| | ||||||||||    
T  22845088 ttagttgtgaattttctctataaatagagagctcacata 22845050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 13290778 - 13290818
Alignment:
Q  8 atctgaaatattttagtactcaatctaaaatattttggtat 48  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  13290778 atctgaaatattttagtacacaatctgaaatattttggtat 13290818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 17452905 - 17453056
Alignment:
Q  69 actcaatcaaatatattttggtactcaatatgataca-tttggtattagatataatatgtgagttacttgttctcaaagtttctta-----tagaatagt 162  Q
    |||||||  |||||||||||||||||||| ||| | | ||| ||| ||||||||| |||||| |||||||||| |||||||||| |     |||| ||||    
T  17452905 actcaatataatatattttggtactcaat-tgagatatttttgtactagatataacatgtgaattacttgttcccaaagtttctcacttattagattagt 17453003  T
Q  163 tgtggattttctctttaaatacatagctcacatatttcattccatataccaaa 215  Q
    |||  ||||||||| |||||| | | |||||||| | ||||||| | ||||||    
T  17453004 tgtaaattttctctataaatagagatctcacatagtacattccacacaccaaa 17453056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 183
Target Start/End: Complemental strand, 25375673 - 25375550
Alignment:
Q  60 tattttagcactcaatcaaatatattttggtactcaa-tatgatacatttggtattagatataatatgtgagttacttgttctcaaagtttcttatagaa 158  Q
    |||||| | |||||||  |||| |||||||||||||| |  |||| |||| ||| ||||| |||||||||| |||||||||| |||||||||| |   |     
T  25375673 tattttggtactcaatataatagattttggtactcaactgagatatattt-gtactagatctaatatgtgaattacttgttcccaaagtttctcacttat 25375575  T
Q  159 tagttgtggattttctctttaaata 183  Q
    |||||||| ||||||||| ||||||    
T  25375574 tagttgtgaattttctctataaata 25375550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 22997 - 23099
Alignment:
Q  8 atctgaaatattttagtactcaatctaaaatattttggtatttgatctgaaatattttagcactcaatc--aaatatattttggtactcaatatgataca 105  Q
    ||||||||||||||||| | |||||| |||||||||||||| | |||| | ||||||| | |||  |||  ||||||||||||||||| ||||||||| |    
T  22997 atctgaaatattttagtgcacaatctgaaatattttggtatataatctaatatattttggtacttgatctgaaatatattttggtactgaatatgatata 23096  T
Q  106 ttt 108  Q
    |||    
T  23097 ttt 23099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 23019 - 23112
Alignment:
Q  8 atctgaaatattttagtactcaatctaaaatattttggtatttgatctgaaatat--tttagcactcaatcaaatatattttggtactcaatat 99  Q
    |||||||||||||| |||   ||||||| ||||||||||| ||||||||||||||  ||| | ||| |||   ||||||||| |||||||||||    
T  23019 atctgaaatattttggtatataatctaatatattttggtacttgatctgaaatatattttggtactgaatatgatatatttttgtactcaatat 23112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 16836613 - 16836698
Alignment:
Q  69 actcaatcaaatatattttggtactcaatatgatacatttg-gtattagatataatatgtgagttacttgttctcaaagtttcttat 154  Q
    |||||||  |||||||||||||||||||| ||| | ||||  |||||| || |||||||||||||||||||| ||||||||||||||    
T  16836613 actcaatataatatattttggtactcaat-tgagatatttttgtattatatctaatatgtgagttacttgttttcaaagtttcttat 16836698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 27308216 - 27308342
Alignment:
Q  79 atatattttggtactcaatatgatacatttg-gtattagatataatatgtgagttacttgttctcaaagtttcttatagaatagttgtggattttctctt 177  Q
    ||||||||||||||||||| ||| |  |||  ||| ||||| |||||||||| ||| |||||||||||||||||  || | |||| ||| |||||||||     
T  27308216 atatattttggtactcaatttgagatgtttttgtactagatctaatatgtgaattatttgttctcaaagtttctcttatattagtagtgaattttctcta 27308315  T
Q  178 taaatacatagctcacatatttcattc 204  Q
    |||||| |  ||||||||| |||||||    
T  27308316 taaatagagtgctcacatagttcattc 27308342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 1067248 - 1067142
Alignment:
Q  77 aaatatattttggtactcaatatgataca-tttggtattagatataatatgtgagttacttgttctcaaagtttcttatagaatagttgtggattttctc 175  Q
    ||||||||||||||||||||| ||| | | ||||||| ||||| |||||||||| |||| |||||  ||||||||| |   | |||||||| ||||||||    
T  1067248 aaatatattttggtactcaat-tgagatattttggtactagatctaatatgtgaattacgtgttcctaaagtttctcacttattagttgtgaattttctc 1067150  T
Q  176 tttaaata 183  Q
    | ||||||    
T  1067149 tataaata 1067142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 16633459 - 16633598
Alignment:
Q  122 atatgtgagttacttgttctcaaagtttcttatagaatagttgtggattttctctttaaatacatagctcacatatttcattccatataccaaaaaaggt 221  Q
    ||||||||||||||||||  |||||||||  ||||| |||||||| ||||||| | |||||| | ||   ||||| ||||||   || ||  |||||||     
T  16633459 atatgtgagttacttgtttccaaagtttcacatagattagttgtgaattttctttataaatagaaagtatacatagttcatttggtacactgaaaaaggc 16633558  T
Q  222 ttttgagttatcaata-ctttttcttctcttctccctttg 260  Q
    || || ||||||||||  ||||||||||||||| ||||||    
T  16633559 ttatgggttatcaatatttttttcttctcttctacctttg 16633598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 8166192 - 8166137
Alignment:
Q  10 ctgaaatattttagtactcaatctaaaatattttggtatttgatctgaaatatttt 65  Q
    ||||| ||||||||||||||||||||||||||||| || || |||| |||||||||    
T  8166192 ctgaattattttagtactcaatctaaaatattttgatacttaatctaaaatatttt 8166137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 14036341 - 14036287
Alignment:
Q  8 atctgaaatattttagtactcaatctaaaatattttggtatttgatctgaaatat 62  Q
    ||||||||||||||  ||  |||||||| ||||||||||| ||||||||||||||    
T  14036341 atctgaaatattttgatatgcaatctaatatattttggtacttgatctgaaatat 14036287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 40941171 - 40941119
Alignment:
Q  13 aaatattttagtactcaatctaaaatattttggtatttgatctgaaatatttt 65  Q
    |||||||  |||||||||||||||||||||||||| |  || |||||||||||    
T  40941171 aaatattacagtactcaatctaaaatattttggtactcaatttgaaatatttt 40941119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 148
Target Start/End: Original strand, 42562133 - 42562161
Alignment:
Q  120 taatatgtgagttacttgttctcaaagtt 148  Q
    |||||||||||||||||||||||||||||    
T  42562133 taatatgtgagttacttgttctcaaagtt 42562161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 30857339 - 30857276
Alignment:
Q  13 aaatattttagtactcaatctaaaatattttggtatttgatctgaaatattttagcactcaatc 76  Q
    ||||||||||| || ||||||||||||||||| || || ||||||||| |||||  ||||||||    
T  30857339 aaatattttagaacacaatctaaaatattttgatacttaatctgaaattttttaatactcaatc 30857276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 53502369 - 53502423
Alignment:
Q  8 atctgaaatattttagtactcaatctaaaatattttggtatttgatctgaaatat 62  Q
    |||||||||||||| |||   ||||||| ||||||||||| ||||||||||||||    
T  53502369 atctgaaatattttggtatataatctaatatattttggtacttgatctgaaatat 53502423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 50708134 - 50708167
Alignment:
Q  10 ctgaaatattttagtactcaatctaaaatatttt 43  Q
    |||||||||||||| |||||||||||||||||||    
T  50708134 ctgaaatattttagcactcaatctaaaatatttt 50708167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 71993 - 71939
Alignment:
Q  8 atctgaaatattttagtactcaatctaaaatattttggtatttgatctgaaatat 62  Q
    ||||||||||||||||||  |||||||| ||||||| ||  ||||||||||||||    
T  71993 atctgaaatattttagtatgcaatctaatatattttagtgcttgatctgaaatat 71939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 32545734 - 32545673
Alignment:
Q  28 caatctaaaatattttggtatttgatctgaa--atattttagcactcaatcaaatatatttt 87  Q
    |||||||| ||||||||||||||||| ||||  ||||||| |||||||||  ||||||||||    
T  32545734 caatctaatatattttggtatttgatatgaaatatattttggcactcaatataatatatttt 32545673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 34561303 - 34561249
Alignment:
Q  8 atctgaaatattttagtactcaatctaaaatattttggtatttgatctgaaatat 62  Q
    |||| ||||||||||| || |||||||||||||||| |||  |||||||||||||    
T  34561303 atctaaaatattttagaacgcaatctaaaatattttagtacatgatctgaaatat 34561249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 8876195 - 8876143
Alignment:
Q  13 aaatattttagtactcaatctaaaatattttggtatttgatctgaaatatttt 65  Q
    ||||||| | ||||||||||||||||||||| |||||  |||||| |||||||    
T  8876195 aaatattatggtactcaatctaaaatattttagtattaaatctgagatatttt 8876143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 8879105 - 8879053
Alignment:
Q  13 aaatattttagtactcaatctaaaatattttggtatttgatctgaaatatttt 65  Q
    ||||||| | ||||||||||||||||||||| |||||  |||||| |||||||    
T  8879105 aaatattatggtactcaatctaaaatattttagtattcaatctgagatatttt 8879053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 34925 - 34973
Alignment:
Q  14 aatattttagtactcaatctaaaatattttggtatttgatctgaaatat 62  Q
    |||||||||| || |||||||||||||||| |||  |||||||||||||    
T  34925 aatattttagaacgcaatctaaaatattttagtacatgatctgaaatat 34973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5372 times since January 2019
Visitors: 5756