View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_152 (Length: 266)

Name: NF0812_low_152
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_152
NF0812_low_152
[»] chr1 (11 HSPs)
chr1 (89-266)||(31965552-31965724)
chr1 (105-158)||(41677116-41677169)
chr1 (89-153)||(1721180-1721244)
chr1 (106-157)||(19866532-19866583)
chr1 (120-158)||(3341722-3341760)
chr1 (105-158)||(2903013-2903066)
chr1 (120-157)||(49632358-49632395)
chr1 (89-158)||(50199462-50199531)
chr1 (98-154)||(9007781-9007836)
chr1 (105-157)||(9976371-9976423)
chr1 (91-158)||(39994836-39994901)
[»] chr4 (11 HSPs)
chr4 (89-158)||(20610779-20610848)
chr4 (105-158)||(12585545-12585598)
chr4 (105-154)||(24039940-24039989)
chr4 (89-158)||(49039431-49039500)
chr4 (105-158)||(17859834-17859885)
chr4 (120-158)||(33359888-33359926)
chr4 (89-157)||(36008315-36008381)
chr4 (111-156)||(54264990-54265035)
chr4 (105-158)||(54854165-54854218)
chr4 (105-157)||(23226692-23226744)
chr4 (89-157)||(49743402-49743470)
[»] chr3 (8 HSPs)
chr3 (105-158)||(6054211-6054264)
chr3 (102-158)||(40160788-40160844)
chr3 (89-158)||(21248976-21249045)
chr3 (100-152)||(8493280-8493330)
chr3 (110-159)||(44592061-44592109)
chr3 (97-157)||(53472673-53472731)
chr3 (105-153)||(32080111-32080159)
chr3 (91-158)||(49639070-49639135)
[»] chr8 (4 HSPs)
chr8 (118-158)||(39208855-39208895)
chr8 (118-157)||(27821892-27821931)
chr8 (118-156)||(22847250-22847288)
chr8 (105-158)||(30461592-30461643)
[»] chr5 (13 HSPs)
chr5 (102-158)||(37986853-37986909)
chr5 (91-158)||(6014821-6014886)
chr5 (102-158)||(22687867-22687923)
chr5 (105-157)||(40384307-40384359)
chr5 (105-157)||(42260707-42260759)
chr5 (99-158)||(39684288-39684347)
chr5 (102-156)||(39760127-39760182)
chr5 (97-158)||(2029116-2029175)
chr5 (89-158)||(32158402-32158469)
chr5 (102-154)||(21017595-21017648)
chr5 (113-158)||(28768661-28768706)
chr5 (105-158)||(34010591-34010644)
chr5 (114-158)||(11246480-11246524)
[»] chr7 (5 HSPs)
chr7 (102-148)||(28968679-28968725)
chr7 (111-158)||(48007084-48007131)
chr7 (120-158)||(26734257-26734295)
chr7 (114-158)||(20947826-20947868)
chr7 (110-158)||(44409261-44409309)
[»] chr2 (9 HSPs)
chr2 (98-158)||(30737030-30737090)
chr2 (120-158)||(1244640-1244678)
chr2 (105-158)||(12206554-12206607)
chr2 (110-158)||(22538600-22538646)
chr2 (105-158)||(39334867-39334920)
chr2 (105-156)||(10767043-10767095)
chr2 (102-157)||(30471960-30472013)
chr2 (106-150)||(32944119-32944163)
chr2 (105-157)||(44487754-44487806)
[»] scaffold0039 (1 HSPs)
scaffold0039 (89-158)||(101871-101938)
[»] scaffold0119 (1 HSPs)
scaffold0119 (120-157)||(1110-1147)
[»] chr6 (3 HSPs)
chr6 (113-157)||(12311390-12311432)
chr6 (120-157)||(26669646-26669683)
chr6 (120-156)||(1395578-1395614)
[»] scaffold0002 (1 HSPs)
scaffold0002 (110-158)||(440460-440508)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 89 - 266
Target Start/End: Original strand, 31965552 - 31965724
Alignment:
Q  89 gcagggaccgggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactagccactaaactacctgatnnnnnnnnnnnnn 188  Q
    ||||||| |||| || |||||||||||| |||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||                 
T  31965552 gcagggatcggggttcgaactccgaacacctcacttattcaccttttaaaaagtgaattctagtcactaactactaaactacctgataaaaaaaaaaaaa 31965651  T
Q  189 nnnnnnnttaagccatgaacgtttcttttgcaccatttgaaccctagtagacgtcgcttttcaaaaagaactatattt 266  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31965652 ag-----ttaagccatgaacgtttcttttgcaccatttgaaccctagtagacgtcgcttttcaaaaagtactatattt 31965724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 41677116 - 41677169
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||||||| ||| | ||||||||||||||  |||||||||||||||||||||||    
T  41677116 gaactccggacaccccacttattcaccttgaaaaaggtgaattctagccactag 41677169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 1721180 - 1721244
Alignment:
Q  89 gcagggaccgggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagcc 153  Q
    |||||| ||||| || |||| ||| ||| ||||||||||||||||  ||||||||||||||||||    
T  1721180 gcaggggccgggtttcgaaccccggacacctcacttattcaccttaaaaaaggtgaattctagcc 1721244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 19866532 - 19866583
Alignment:
Q  106 aactccgaacatctcacttattcaccttttaaaaggtgaattctagccacta 157  Q
    ||||||| ||| | ||||||||||||||  ||||||||||||||||||||||    
T  19866532 aactccggacaccccacttattcaccttaaaaaaggtgaattctagccacta 19866583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 3341760 - 3341722
Alignment:
Q  120 cacttattcaccttttaaaaggtgaattctagccactag 158  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  3341760 cacttattcaccttgaaaaaggtgaattctagccactag 3341722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 2903066 - 2903013
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||| ||||||| | ||||||||||||||  |||||| ||||||||||||||||    
T  2903066 gaaccccgaacaccccacttattcaccttgaaaaaggagaattctagccactag 2903013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 49632358 - 49632395
Alignment:
Q  120 cacttattcaccttttaaaaggtgaattctagccacta 157  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  49632358 cacttattcacctttaaaaaggtgaattctaggcacta 49632395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 50199531 - 50199462
Alignment:
Q  89 gcagggaccgggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||||| ||||| || |||| ||| ||| | ||||||||||||||  ||||||| |||||||||||||||    
T  50199531 gcaggggccggggttcgaaccccggacaccccacttattcaccttgaaaaaggtcaattctagccactag 50199462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 9007836 - 9007781
Alignment:
Q  98 gggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagcca 154  Q
    |||||| |||| |||||||||||| ||||||||| || |||| ||||||||||||||    
T  9007836 gggattcgaaccccgaacatctcatttattcacc-ttgaaaaagtgaattctagcca 9007781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 9976423 - 9976371
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagccacta 157  Q
    |||||||| ||| | ||||||||||||||  |||| |||||||||||||||||    
T  9976423 gaactccggacaccccacttattcaccttgaaaaaagtgaattctagccacta 9976371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 39994901 - 39994836
Alignment:
Q  91 agggaccgggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||| ||||| ||||||  ||| ||||| |||||||||||||| |||  |||||||||||||||||||    
T  39994901 aggggccggggtttgaatcccggacatcccacttattcaccttataa--ggtgaattctagccactag 39994836  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 20610779 - 20610848
Alignment:
Q  89 gcagggaccgggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||||| ||||| || |||||||| ||||| ||||||||||||||  |||||||||||||||||||||||    
T  20610779 gcaggggccggggttcgaactccggacatcccacttattcaccttaaaaaaggtgaattctagccactag 20610848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 12585598 - 12585545
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||| ||||||| |||||||||||| |||  |||||||||||||||||||||||    
T  12585598 gaaccccgaacacctcacttattcatcttgaaaaaggtgaattctagccactag 12585545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 24039940 - 24039989
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagcca 154  Q
    |||| ||||||| ||||||||||||||||  |||||||||||||||||||    
T  24039940 gaaccccgaacacctcacttattcaccttgaaaaaggtgaattctagcca 24039989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 49039500 - 49039431
Alignment:
Q  89 gcagggaccgggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||||||| ||| || |||| ||| ||| | ||||||||||||||  |||||||||||||||||||||||    
T  49039500 gcagggactggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattctagccactag 49039431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 17859834 - 17859885
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||| ||||||| ||||||||||||||  ||| |||||||||||||||||||||    
T  17859834 gaaccccgaacacctcacttattcacc--ttataaggtgaattctagccactag 17859885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 33359888 - 33359926
Alignment:
Q  120 cacttattcaccttttaaaaggtgaattctagccactag 158  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  33359888 cacttattcaccttgaaaaaggtgaattctagccactag 33359926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 36008315 - 36008381
Alignment:
Q  89 gcagggaccgggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccacta 157  Q
    |||||| ||||| || |||| ||||||| | ||||||||||||  ||| ||||||||||||||||||||    
T  36008315 gcaggggccggggttcgaaccccgaacaccccacttattcacc--ttataaggtgaattctagccacta 36008381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 54264990 - 54265035
Alignment:
Q  111 cgaacatctcacttattcaccttttaaaaggtgaattctagccact 156  Q
    |||||| ||||||||||||||||  ||||| |||||||||||||||    
T  54264990 cgaacacctcacttattcaccttgaaaaagatgaattctagccact 54265035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 54854218 - 54854165
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||| ||| ||||| ||||||||||||||  |||| ||||||||||||||||||    
T  54854218 gaaccccggacatcacacttattcaccttgaaaaaagtgaattctagccactag 54854165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 23226744 - 23226692
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagccacta 157  Q
    |||| ||| ||||||||||||||||||||  |||| ||||||| |||||||||    
T  23226744 gaacaccggacatctcacttattcaccttaaaaaatgtgaattatagccacta 23226692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 49743402 - 49743470
Alignment:
Q  89 gcagggaccgggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccacta 157  Q
    |||||| |||||||| |||| ||| ||| |||||||||| |||||  |||||||||||| || ||||||    
T  49743402 gcaggggccgggattcgaaccccggacacctcacttatttaccttgaaaaaggtgaattttaaccacta 49743470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 6054264 - 6054211
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||| |||||||    
T  6054264 gaactccgaacacctcacttattcaccttgaaaaaggtgaattctaaccactag 6054211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 40160788 - 40160844
Alignment:
Q  102 tttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    ||||||| ||| ||| | ||||||||||||||| |||||||||||||||||||||||    
T  40160788 tttgaaccccggacaccccacttattcacctttaaaaaggtgaattctagccactag 40160844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 21249045 - 21248976
Alignment:
Q  89 gcagggaccgggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||||| ||||| || |||| | ||||| | ||||||||||||||  |||||||||||||||||||||||    
T  21249045 gcaggggccggggttcgaaccctgaacaccccacttattcaccttgaaaaaggtgaattctagccactag 21248976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 8493280 - 8493330
Alignment:
Q  100 gatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagc 152  Q
    |||| |||||||||||| || |||||||||||  |||||||||||||||||||    
T  8493280 gattcgaactccgaacaccttacttattcacc--ttaaaaggtgaattctagc 8493330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 44592061 - 44592109
Alignment:
Q  110 ccgaacatctcacttattcaccttttaaaaggtgaattctagccactagc 159  Q
    |||||||||| |||||||||||||  |||||||||||| |||||||||||    
T  44592061 ccgaacatct-acttattcaccttgaaaaaggtgaattatagccactagc 44592109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 53472673 - 53472731
Alignment:
Q  97 cgggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccacta 157  Q
    |||| |||||||||| |||| | |||||||||||  |||| ||||||||||||||||||||    
T  53472673 cggggtttgaactccaaacaccccacttattcac--tttataaggtgaattctagccacta 53472731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 32080111 - 32080159
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagcc 153  Q
    |||| ||||||| | ||||||||||||||  ||||||||||||||||||    
T  32080111 gaaccccgaacaccccacttattcaccttgaaaaaggtgaattctagcc 32080159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 49639070 - 49639135
Alignment:
Q  91 agggaccgggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||| ||||| || |||| ||||||| | |||||||||||||| |||  |||||||||||||||||||    
T  49639070 aggggccggggttcgaaccccgaacaccccacttattcaccttgtaa--ggtgaattctagccactag 49639135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 39208895 - 39208855
Alignment:
Q  118 ctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  39208895 ctcacttattcacctttaaaaaggtgaattctagccactag 39208855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 27821931 - 27821892
Alignment:
Q  118 ctcacttattcaccttttaaaaggtgaattctagccacta 157  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  27821931 ctcacttattcaccttaaaaaaggtgaattctagccacta 27821892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 22847288 - 22847250
Alignment:
Q  118 ctcacttattcaccttttaaaaggtgaattctagccact 156  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  22847288 ctcacttattcaccttaaaaaaggtgaattctagccact 22847250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 30461592 - 30461643
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||||||  ||||||||||||||||||  ||| |||||||||||||||||||||    
T  30461592 gaactccagacatctcacttattcacc--ttataaggtgaattctagccactag 30461643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 37986909 - 37986853
Alignment:
Q  102 tttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    ||||||| ||| ||||| ||||||||||||||  |||||||||||||||||||||||    
T  37986909 tttgaaccccggacatcccacttattcaccttgaaaaaggtgaattctagccactag 37986853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 6014821 - 6014886
Alignment:
Q  91 agggaccgggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    ||||| |||| ||||||||||| ||| ||||||||||||  | ||| |||||||||||||||||||||    
T  6014821 agggatcggggtttgaactccggacacctcacttattca--tcttataaggtgaattctagccactag 6014886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 22687923 - 22687867
Alignment:
Q  102 tttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    ||||||| ||||||| | ||||||||||||||  ||||||||||||||| |||||||    
T  22687923 tttgaaccccgaacaccccacttattcaccttgaaaaaggtgaattctaaccactag 22687867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 40384307 - 40384359
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagccacta 157  Q
    |||||||| ||| | ||||||||||||||  ||||||||||||||||||||||    
T  40384307 gaactccggacaccccacttattcaccttaaaaaaggtgaattctagccacta 40384359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 42260759 - 42260707
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagccacta 157  Q
    |||||||| ||||| ||||||||||||||| ||||| ||||||||||| ||||    
T  42260759 gaactccggacatcccacttattcacctttaaaaagatgaattctagctacta 42260707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 39684288 - 39684347
Alignment:
Q  99 ggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||||| ||| ||| ||||| ||||||||||||||  ||||||||||||||| |||||||    
T  39684288 ggatttaaaccccggacatcccacttattcaccttaaaaaaggtgaattctaaccactag 39684347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 39760127 - 39760182
Alignment:
Q  102 tttgaactccgaacatctcacttattcaccttttaa-aaggtgaattctagccact 156  Q
    ||||||| ||||||||| || ||||||||||| ||| |||||||||||||||||||    
T  39760127 tttgaaccccgaacatcccatttattcaccttataataaggtgaattctagccact 39760182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 2029175 - 2029116
Alignment:
Q  97 cgggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    ||||||| |||| ||||||| | |||||||||||||| |||  |||||||||||||||||||    
T  2029175 cgggattcgaaccccgaacaccccacttattcaccttataa--ggtgaattctagccactag 2029116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 32158469 - 32158402
Alignment:
Q  89 gcagggaccgggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||||| ||||| || |||| ||||||| | |||||||||||||| |||  |||||||||||||||||||    
T  32158469 gcaggggccggggttcgaaccccgaacaccccacttattcaccttataa--ggtgaattctagccactag 32158402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 21017648 - 21017595
Alignment:
Q  102 tttgaactccgaacatctcacttattcaccttttaa-aaggtgaattctagcca 154  Q
    ||||||| ||| ||||| |||||||||||||| ||| |||||||||||||||||    
T  21017648 tttgaaccccggacatcccacttattcaccttataataaggtgaattctagcca 21017595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 28768661 - 28768706
Alignment:
Q  113 aacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||||||||||||| ||||||  ||||||||||||||| |||||||    
T  28768661 aacatctcacttatccaccttgaaaaaggtgaattctaaccactag 28768706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 34010591 - 34010644
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||| ||| |||||||| ||||||||||| || |||||||||||||| ||||||    
T  34010591 gaaccccggacatctcatttattcaccttatataaggtgaattctagtcactag 34010644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 11246524 - 11246480
Alignment:
Q  114 acatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    ||||| |||||||||| |||  |||||||||||||||||||||||    
T  11246524 acatcccacttattcagcttgaaaaaggtgaattctagccactag 11246480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 28968725 - 28968679
Alignment:
Q  102 tttgaactccgaacatctcacttattcaccttttaaaaggtgaattc 148  Q
    ||||||| ||||||||||||||||||||||||  |||||||||||||    
T  28968725 tttgaaccccgaacatctcacttattcaccttgaaaaaggtgaattc 28968679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 48007084 - 48007131
Alignment:
Q  111 cgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||||||| ||||| ||||||||  |||||||||||||||||||||||    
T  48007084 cgaacatcccacttgttcaccttacaaaaggtgaattctagccactag 48007131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 26734295 - 26734257
Alignment:
Q  120 cacttattcaccttttaaaaggtgaattctagccactag 158  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  26734295 cacttattcaccttgaaaaaggtgaattctagccactag 26734257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 20947826 - 20947868
Alignment:
Q  114 acatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||    
T  20947826 acatctcacttattcac--tttaaaaagtgaattctagccactag 20947868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 44409261 - 44409309
Alignment:
Q  110 ccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    ||||||| | ||||||||||||||  ||||||||||||||| |||||||    
T  44409261 ccgaacaccccacttattcaccttgaaaaaggtgaattctaaccactag 44409309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 30737030 - 30737090
Alignment:
Q  98 gggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||||||||||| || ||||| ||||||||||||||  |||| ||||||||||| ||||||    
T  30737030 gggatttgaacttcggacatcccacttattcaccttaaaaaatgtgaattctagtcactag 30737090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 1244640 - 1244678
Alignment:
Q  120 cacttattcaccttttaaaaggtgaattctagccactag 158  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  1244640 cacttattcaccttgaaaaaggtgaattctagccactag 1244678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 12206554 - 12206607
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||| ||||||| | | ||||||||||||  |||||||||||||||||||||||    
T  12206554 gaaccccgaacaccccgcttattcaccttgaaaaaggtgaattctagccactag 12206607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 22538600 - 22538646
Alignment:
Q  110 ccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    ||||||| |||||||||||||||| |||  |||||||||||||||||||    
T  22538600 ccgaacacctcacttattcaccttataa--ggtgaattctagccactag 22538646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 39334920 - 39334867
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||||||  ||||| ||||||||||| ||  |||||||||||||||||||||||    
T  39334920 gaactccagacatcccacttattcactttgaaaaaggtgaattctagccactag 39334867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 10767043 - 10767095
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaa-aaggtgaattctagccact 156  Q
    |||||||||||| |||||||||||| |||  || |||||||||||||||||||    
T  10767043 gaactccgaacacctcacttattcagcttaaaagaaggtgaattctagccact 10767095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 30472013 - 30471960
Alignment:
Q  102 tttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccacta 157  Q
    ||||||||||||||||  || ||||||||  |||| ||||||||||||||||||||    
T  30472013 tttgaactccgaacattccatttattcac--tttataaggtgaattctagccacta 30471960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 32944119 - 32944163
Alignment:
Q  106 aactccgaacatctcacttattcaccttttaaaaggtgaattcta 150  Q
    ||||||||||| ||||||||||||||||  |||| ||||||||||    
T  32944119 aactccgaacacctcacttattcaccttgaaaaaagtgaattcta 32944163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 44487806 - 44487754
Alignment:
Q  105 gaactccgaacatctcacttattcaccttttaaaaggtgaattctagccacta 157  Q
    |||| ||| ||||| ||||||||||||||  ||||||||||||||| ||||||    
T  44487806 gaaccccggacatcccacttattcaccttaaaaaaggtgaattctaaccacta 44487754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 101871 - 101938
Alignment:
Q  89 gcagggaccgggatttgaactccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    |||||| ||||| || |||| || |||||| ||||||||||||  ||| |||||||||||||||||||||    
T  101871 gcaggggccggggttcgaaccccaaacatcccacttattcacc--ttataaggtgaattctagccactag 101938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 1110 - 1147
Alignment:
Q  120 cacttattcaccttttaaaaggtgaattctagccacta 157  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  1110 cacttattcaccttgaaaaaggtgaattctagccacta 1147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 12311432 - 12311390
Alignment:
Q  113 aacatctcacttattcaccttttaaaaggtgaattctagccacta 157  Q
    |||||||||||||||||||  |||||| |||||||||||||||||    
T  12311432 aacatctcacttattcacc--ttaaaatgtgaattctagccacta 12311390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 26669683 - 26669646
Alignment:
Q  120 cacttattcaccttttaaaaggtgaattctagccacta 157  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  26669683 cacttattcaccttgaaaaaggtgaattctagccacta 26669646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 1395614 - 1395578
Alignment:
Q  120 cacttattcaccttttaaaaggtgaattctagccact 156  Q
    ||||||||||||||  |||||||||||||||||||||    
T  1395614 cacttattcaccttgaaaaaggtgaattctagccact 1395578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 440460 - 440508
Alignment:
Q  110 ccgaacatctcacttattcaccttttaaaaggtgaattctagccactag 158  Q
    ||||||| | ||||||||||||||  ||||||||||||||| |||||||    
T  440460 ccgaacaccccacttattcaccttaaaaaaggtgaattctaaccactag 440508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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