View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_159 (Length: 252)

Name: NF0812_low_159
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_159
NF0812_low_159
[»] chr1 (4 HSPs)
chr1 (1-244)||(7104001-7104252)
chr1 (187-244)||(7104290-7104347)
chr1 (181-244)||(15321060-15321123)
chr1 (178-220)||(45967843-45967885)
[»] chr8 (2 HSPs)
chr8 (155-232)||(34695821-34695899)
chr8 (176-244)||(32166628-32166696)
[»] chr5 (2 HSPs)
chr5 (178-245)||(973127-973194)
chr5 (176-241)||(7113610-7113675)
[»] chr7 (2 HSPs)
chr7 (178-244)||(757935-758001)
chr7 (192-243)||(29152482-29152532)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 7104001 - 7104252
Alignment:
Q  1 caccgttagatagatgtactagtagttttaactttt---------ccggtggaacagacagacacgggaagtttactagtctagctcaaaattattatct 91  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7104001 caccgttagatagatgtactagtagttttaacttttaataaatttccggtggaacagacagacacgggaagtttactagtctagctcaaaattattatct 7104100  T
Q  92 tttctaaattattttcttgataaattggggtaggttatccttataatagaaaaatc-nnnnnnncttcgtctttattcttgcaataattatcattttctt 190  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||  ||||||||    
T  7104101 tttctaagttattttcttgataaattggggtaggttatccttataatagaaaaatcttttttttctttgtctttattcttgcaataatta--attttctt 7104198  T
Q  191 atcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcatctc 244  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7104199 atcaaaaatattaaatttcttcatctccttcatgcaacatgtaatattcatctc 7104252  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 7104290 - 7104347
Alignment:
Q  187 tcttatcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcatctc 244  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7104290 tcttatcaagaatattaaatttcttcatctccttcattcaacatgtaatattcatctc 7104347  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 15321060 - 15321123
Alignment:
Q  181 tcattttcttatcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcatctc 244  Q
    |||||||||| ||||||| ||||||||| ||||| |||||||| ||||||||||| ||||||||    
T  15321060 tcattttcttctcaaaaacattaaattttttcatatccttcattcaacatgtaatcttcatctc 15321123  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 45967885 - 45967843
Alignment:
Q  178 ttatcattttcttatcaaaaatattaaatttcttcatctcctt 220  Q
    ||||||||||| | |||||||||||||||||||||||||||||    
T  45967885 ttatcattttcatttcaaaaatattaaatttcttcatctcctt 45967843  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 34695821 - 34695899
Alignment:
Q  155 cttcgtctttattcttgcaataa-ttatcattttcttatcaaaaatattaaatttcttcatctccttcatacaacatgt 232  Q
    |||| ||||||||||| |||| | ||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||||    
T  34695821 cttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttcacctccttcattcaacatgt 34695899  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 32166696 - 32166628
Alignment:
Q  176 aattatcattttcttatcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcatctc 244  Q
    ||||||||||||| | |||| || || ||| |||||||||||||| || ||||||||||| ||||||||    
T  32166696 aattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctc 32166628  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 973127 - 973194
Alignment:
Q  178 ttatcattttcttatcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcatctca 245  Q
    ||||||||||  | ||||||| ||||||||||||||||||||| || |||||||| || |||||||||    
T  973127 ttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctca 973194  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 7113675 - 7113610
Alignment:
Q  176 aattatcattttcttatcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcat 241  Q
    ||||||||||||| | |||| ||||||||| ||||||||||| ||||| |||| ||| || |||||    
T  7113675 aattatcattttcatctcaagaatattaaacttcttcatctcattcattcaacgtgtgattttcat 7113610  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 758001 - 757935
Alignment:
Q  178 ttatcattttcttatcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcatctc 244  Q
    ||||||||||| | |||||||| |||||||| || ||||||||||| |||||||| || ||||||||    
T  758001 ttatcattttcatctcaaaaatcttaaatttatttatctccttcattcaacatgtgatcttcatctc 757935  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 29152532 - 29152482
Alignment:
Q  192 tcaaaaatattaaatttcttcatctccttcatacaacatgtaatattcatct 243  Q
    ||||||| ||||||||| ||||||| |||||| |||||||||||||||||||    
T  29152532 tcaaaaacattaaattt-ttcatctacttcattcaacatgtaatattcatct 29152482  T

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