View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_164 (Length: 251)
Name: NF0812_low_164
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_164 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 40574143 - 40573903
Alignment:
| Q |
11 |
cacagattgtaacaatttatgcatatgaagaaatttgtcatagaagaacgaaaataaatattattgaactcatatgcttgtaaaggtggaattaatgttg |
110 |
Q |
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| T |
40574143 |
cacagattgtaacaatttatgcatatgaagaaatttgtcatagaagaacgaaaataaatattattgaactcgtatgcttgtaaaggtggaattaatgttg |
40574044 |
T |
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| Q |
111 |
ttttgagagtgaaaagccatttagcaacatagttggagaaacctaccaaagcataacacaagttcacttgcaaatcccatatttacatcgacacaaatat |
210 |
Q |
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| T |
40574043 |
ttttgagagtgaaaagccatttagcaacatagttggagaaacctaccaaagcataacacaagttcacttggaaatcccatatttacatcgagacaaatat |
40573944 |
T |
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| Q |
211 |
aaatatcatgtccaatggactaatacagggggaaatacaac |
251 |
Q |
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| T |
40573943 |
aaatatcatgtccaatggactaatacagggggaaatacaac |
40573903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 40569407 - 40569302
Alignment:
| Q |
146 |
gagaaacctaccaaagcataacacaagttcacttgcaaatcccatatttacatcgacacaaatataaatatcatgtccaatggactaatacagggggaaa |
245 |
Q |
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| T |
40569407 |
gagaaacctaccaaagcataacacaaactcaattgcaaatcctatttttacatcgatacaaatatgaatatcatgtgcaatagaccaatacaggggaaaa |
40569308 |
T |
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| Q |
246 |
tacaac |
251 |
Q |
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|||||| |
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| T |
40569307 |
tacaac |
40569302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 40569497 - 40569411
Alignment:
| Q |
24 |
aatttatgcatatgaagaaatttgtcatagaagaacgaaaataaatattattgaactcatatgcttgtaaaggtggaattaatgttg |
110 |
Q |
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| T |
40569497 |
aatttattcatatgaagaaatttgtcacataagaatgaaaataaatattactgaaataatatgcttctaaaggtggaactaatgttg |
40569411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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