View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_166 (Length: 251)
Name: NF0812_low_166
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_166 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 74 - 251
Target Start/End: Complemental strand, 45519507 - 45519331
Alignment:
| Q |
74 |
tgcctactttcttgttcttgaattagtaggcaattttaaacaaatccattttgcaaattccagctaacatctaactgcttcaaggtcaaacttgaatgca |
173 |
Q |
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| T |
45519507 |
tgcctactttcttgttcttgaattagtaggcaattttaaacaaatccattttgcaaattccagctaacatctaactgcttcaaggtcaaacttgaatgca |
45519408 |
T |
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| Q |
174 |
attattcaattgactctatgctagctccttttnnnnnnnnnttctattaacctgatctttccatggaagaaactttat |
251 |
Q |
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| T |
45519407 |
attattcaattgactctatgctagctcctttt-aaaaaaaattctattaacttgatctttccatggaagaaactttat |
45519331 |
T |
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