View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_167 (Length: 250)
Name: NF0812_low_167
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_167 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 41820065 - 41820303
Alignment:
| Q |
11 |
atgaagagcatatttcctcatccatgttgatctgccagcttgtgctgatgactaatcaagtttccactcaatgggctccctcagtaactcacatgggcgt |
110 |
Q |
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| T |
41820065 |
atgaagagcatatttcctcatccatgttgatatgccagcttgtgctgatgactaatcaagtttccactcaatgggctccctcagtaactcacatgggcct |
41820164 |
T |
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| Q |
111 |
ccaaataaaccagttattataatcaacaaattcaccaatccttcactataaaaccccttcttattcctctcaaccatcatcactcactcacacaccaaat |
210 |
Q |
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| T |
41820165 |
ccaaataaaccagttattataatcaacaaattcaccaatccttccctataaaatcccctcttatt-ctctcaaacatcatcactcactcacacaccaaat |
41820263 |
T |
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| Q |
211 |
caaactaagagtattagcaccttaatcttaatcattaatc |
250 |
Q |
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| T |
41820264 |
caaactaagagtattagcaccttaatcttaatcattaatc |
41820303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 84 - 237
Target Start/End: Complemental strand, 44830163 - 44830003
Alignment:
| Q |
84 |
ggctccctcagtaactcacatgggcgtccaaataaaccagttattataatcaacaaattcaccaatcc--ttcactataaaaccccttcttattcctctc |
181 |
Q |
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||||| || ||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |||| ||||||||||||| |
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| T |
44830163 |
ggctcactgagttactcacatgggcctccaaataaaccagttattttaatcaacaaattcaccaatccttttccctataaagccccctcttattcctctc |
44830064 |
T |
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| Q |
182 |
aaccatcatcactcactcac----acaccaaatcaaact-aagagtattagcaccttaatc |
237 |
Q |
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|| ||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |
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| T |
44830063 |
aaacatcatcactcactcactcatacaccaaatcaaactaaagagtattagcacctcaatc |
44830003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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