View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_170 (Length: 250)
Name: NF0812_low_170
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_170 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 19049714 - 19049957
Alignment:
| Q |
1 |
tgagattataaatattttacgcaaaggtctctgactctgtcaaattttacttgtattagtatattagtgcttgaaagattgtgttttattggtaattcgt |
100 |
Q |
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| T |
19049714 |
tgagattataaatattttacgcaaaggtctctgactctgtcaaattttacttgtattagtatattagtgcttgaaagattgtgttttattggtaattcgt |
19049813 |
T |
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| Q |
101 |
acgctgttgttattgttgtcaaatttaattagagcaaacaattgaatttgtagatgcaggaaaataggtccctgagattataaatattttacgtaaaggt |
200 |
Q |
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| T |
19049814 |
acgctgttgttattgttgtcaaatttaattagagcaaacaattgaatttgtagacgcaggcaaataggtccctgagattataaatattttacgtaaaggt |
19049913 |
T |
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| Q |
201 |
ccctgactctgttgaatttactcatattagtatatctgtgctcc |
244 |
Q |
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| T |
19049914 |
ctctgactctgttgaatttactcatattagtatattagtgctcc |
19049957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 19049886 - 19050023
Alignment:
| Q |
1 |
tgagattataaatattttacgcaaaggtctctgactctgtcaaattttacttgtattagtatattagtgcttgaaagattgtgttttattggtaattcgt |
100 |
Q |
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| T |
19049886 |
tgagattataaatattttacgtaaaggtctctgactctgttgaattt-actcatattagtatattagtgctccgaagattgtgtttcattcgtaattcgt |
19049984 |
T |
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| Q |
101 |
acgctgttgttattgttgtcaaatttaattagagcaaac |
139 |
Q |
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| T |
19049985 |
acgctgttgttattgttgtcaaatttaattagagtaaac |
19050023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 19049548 - 19049753
Alignment:
| Q |
1 |
tgagattataaatattttacgcaaaggtctctgactctgtcaaattttacttgtattagtatattagtgcttgaaagattgtgttttattggtaattcgt |
100 |
Q |
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| T |
19049548 |
tgagattatgaatatttt--gaaaaggtctcggactctgtcgaattttactcgtattagtatatcagtgctttgaagattgtgttttattcgtaa----- |
19049640 |
T |
|
| Q |
101 |
acgctgttgttattgttgtcaaatttaatta---gagcaaacaattgaatttgtagatgcaggaaaataggtccctgagattataaatattttacgtaaa |
197 |
Q |
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| T |
19049641 |
--gctgttgttattgttgtcaaatttaataatttgagcaaagtattgaattcctatgcgcgggcaaatagctccctgagattataaatattttacgcaaa |
19049738 |
T |
|
| Q |
198 |
ggtccctgactctgt |
212 |
Q |
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|||| |||||||||| |
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| T |
19049739 |
ggtctctgactctgt |
19049753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 19049403 - 19049476
Alignment:
| Q |
16 |
tttacgcaaaggtctctgactctgtcaaattttacttgtattagtatattagtgcttgaaagattgtgttttatt |
90 |
Q |
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| T |
19049403 |
tttacgaaaaagtctctg-ctctatcgaattttactcgtattagtatattaatgcttcgaagattgtgttttatt |
19049476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 19049282 - 19049332
Alignment:
| Q |
40 |
tcaaattttacttgtattagtatattagtgcttgaaagattgtgttttatt |
90 |
Q |
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| T |
19049282 |
tcaaattttacttatattagtatattaatgcttagaaaattgtgttttatt |
19049332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 28485271 - 28485308
Alignment:
| Q |
23 |
aaaggtctctgactctgtcaaattttacttgtattagt |
60 |
Q |
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| T |
28485271 |
aaaggtctctgactttgtcaaattttacttatattagt |
28485308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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