View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_173 (Length: 248)

Name: NF0812_low_173
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_173
NF0812_low_173
[»] chr8 (1 HSPs)
chr8 (10-236)||(27778310-27778536)
[»] chr5 (1 HSPs)
chr5 (124-216)||(12639499-12639591)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 27778536 - 27778310
Alignment:
Q  10 tcttgagcaattctataactttgattcaactcagcacacatatttgatgaactaagacaactctttattccatcccatttatgtgaacttctaacccttc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27778536 tcttgagcaattctataactttgattcaactcagcacacatatttgatgaactaagacaactctttattccatcccatttatgtgaacttctaacccttc 27778437  T
Q  110 tacgaagccaaaatgaaaaatcatccacacgatattctaaatatgacctattaggttcaatattcccatgacctctaagtgtaaccgaatacacaaaaat 209  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27778436 tacgaagccaaaatgaaaaatcatccactcgatattctaaatatgacctattaggttcaatattcccatgacctctaagtgtaactgaatacacaaaaat 27778337  T
Q  210 caccaaagaacccaacaatacaatgag 236  Q
    |||||||||||||||||||||||||||    
T  27778336 caccaaagaacccaacaatacaatgag 27778310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 12639591 - 12639499
Alignment:
Q  124 gaaaaatcatccacacgatattctaaatatgacctattaggttcaatattcccatgacctctaagtgtaaccgaatacacaaaaatcaccaaa 216  Q
    ||||||||||||| ||| ||||| ||||| | |||||||||||||||  | |||||||| | ||| ||||||   || |||||||| ||||||    
T  12639591 gaaaaatcatccaaacggtattccaaataagccctattaggttcaatcataccatgaccacgaagagtaaccatgtaaacaaaaataaccaaa 12639499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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