View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_187 (Length: 218)
Name: NF0812_low_187
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_187 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 37167201 - 37167003
Alignment:
| Q |
14 |
aatacaccgtttttctctctcgaccagattttgaaccctgcataaatagttaatttaatacaat-tagctaggtatataaatatgcaatag--ccaattg |
110 |
Q |
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| T |
37167201 |
aatacaccgtttttccctctcgaccagattttgaaccctgcataaatagttaatttaatacaagctagcaaagtatataaatatgcaatatatccaat-g |
37167103 |
T |
|
| Q |
111 |
tctaaagccacacacaaccatctaccaattttccatagccacttaacatgaaaacatcaactactgctattgtgtccctctttattaccctcttcatctc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37167102 |
tctaaagccacacacaaccatctaccaattttccatagccaattaacatgaaaacatcaactaccactattgtgtccctctttattaccctcttcatctc |
37167003 |
T |
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