View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_188 (Length: 207)
Name: NF0812_low_188
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_188 |
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Alignment Details
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 7901082 - 7901163
Alignment:
| Q |
1 |
ctaccaaattaacctagctcactttttatccttcatgcaacaaactgatagatcattttaccttctcattacaagtattcaa |
82 |
Q |
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| T |
7901082 |
ctaccaaattaacctagctcactttttatccttcatgcaacaaactgatagatcatttcaccttctcaatacaagtattcaa |
7901163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 130
Target Start/End: Original strand, 7901184 - 7901213
Alignment:
| Q |
101 |
gtatatatatgtgcaccacaatgtatctgt |
130 |
Q |
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| T |
7901184 |
gtatatatatgtgcaccacaatgtatctgt |
7901213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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