View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_189 (Length: 207)
Name: NF0812_low_189
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_189 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 41929153 - 41929335
Alignment:
| Q |
3 |
atatcatttccttaagtgatgtacatggcagtattggaaagacaatgctagagttgtgaaatttgcatgaagtttaaataatactgataaggtacaaaat |
102 |
Q |
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| T |
41929153 |
atatcatttccttaagtgatgtacatggcagtattggaaagacaatgctagagttgtgaaatttgcatgaagtttaaataatactgataaggtacaaaat |
41929252 |
T |
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| Q |
103 |
gtagtgatgagagtattattgctagtttgctaggttttcatgtcttcgaaattgttgaattaatgtctcccagacaaaatgta |
185 |
Q |
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| T |
41929253 |
gtagtgatgagagtattattgctagtttgctaggttttcttgtctttgaaattgttgaattgatgtctcacaaacaaaatgta |
41929335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 41938402 - 41938479
Alignment:
| Q |
15 |
taagtgatgtacatggcagtattggaaagacaatgctagagttgtgaaatttgcatgaagtttaaataatactgataa |
92 |
Q |
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| T |
41938402 |
taagtgaggtacatgacagtattggtaagagaatgctagagttgtgatatttgcatgaagtttaaataatactgataa |
41938479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 41911423 - 41911508
Alignment:
| Q |
15 |
taagtgatgtacatggcagtattggaaagacaatgctagagttgtgaaatttgcatgaagtttaaataatactgataaggtacaaa |
100 |
Q |
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| T |
41911423 |
taagtgaggtacatgacaatattggaaagagaatgctagagttgtgacatttgcatgaaatttaaataatactaataaagtacaaa |
41911508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 41911850 - 41911915
Alignment:
| Q |
120 |
attgctagtttgctaggttttcatgtcttcgaaattgttgaattaatgtctcccagacaaaatgta |
185 |
Q |
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| T |
41911850 |
attgcgagtttgttaggttttcatgtctttgaaattgttgaattaatgtctcccaatcaaaatgta |
41911915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 41938517 - 41938560
Alignment:
| Q |
164 |
aatgtctcccagacaaaatgtataaacatctattgagtttttct |
207 |
Q |
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| T |
41938517 |
aatgtctttcagacaaaatgtataaaaatctattgagtttttct |
41938560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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