View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_2 (Length: 845)

Name: NF0812_low_2
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_2
NF0812_low_2
[»] chr4 (3 HSPs)
chr4 (574-817)||(25737183-25737426)
chr4 (10-55)||(25735570-25735615)
chr4 (538-626)||(38656558-38656643)
[»] chr1 (4 HSPs)
chr1 (167-222)||(45691579-45691634)
chr1 (173-216)||(28165109-28165152)
chr1 (176-222)||(51120694-51120740)
chr1 (170-219)||(36437180-36437229)
[»] chr7 (1 HSPs)
chr7 (169-219)||(46101155-46101205)
[»] chr2 (2 HSPs)
chr2 (167-222)||(13027917-13027972)
chr2 (731-780)||(37081799-37081848)
[»] chr8 (1 HSPs)
chr8 (181-223)||(30105596-30105638)
[»] chr6 (4 HSPs)
chr6 (165-219)||(2950135-2950189)
chr6 (181-219)||(5428831-5428869)
chr6 (181-219)||(24789915-24789953)
chr6 (170-219)||(606598-606647)
[»] scaffold1809 (1 HSPs)
scaffold1809 (170-219)||(478-527)
[»] chr5 (1 HSPs)
chr5 (170-219)||(3629190-3629239)
[»] chr3 (1 HSPs)
chr3 (170-219)||(46918444-46918493)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 574 - 817
Target Start/End: Original strand, 25737183 - 25737426
Alignment:
Q  574 ttggagtctttatcttctcatttgagaacattctagaggttttagagtgagttgttcatggtatggagaaggctttgtaattttgatttgattcattcta 673  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  25737183 ttggagtctttatcttctcatttgagaatattctagaggttttagagtgagttgttcatggtttgaagaaggctttgtaattttgatttgattcattcta 25737282  T
Q  674 attcacnnnnnnncttaatagacaaggtcataggtgttttgaatctcgtatgctactaatcatgtaattggaaaaagacagacacctcatagaagttatg 773  Q
    ||||||       |||||||||||||||||| |||||||||||||||  ||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  25737283 attcactttttttcttaatagacaaggtcatgggtgttttgaatctctgatgctacaaatcatgtaattgggaaaagacagacacctcatagaagttatg 25737382  T
Q  774 gaagctaaagagtcatctatgattgatgctaacttgagataagt 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25737383 gaagctaaagagtcatctatgattgatgctaacttgagataagt 25737426  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 25735570 - 25735615
Alignment:
Q  10 aataatatgcacgacttcatggaactgcagaaaatttccactacgt 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  25735570 aataatatgcacgacttcatggaactgcagaaaatttccactacgt 25735615  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 626
Target Start/End: Original strand, 38656558 - 38656643
Alignment:
Q  538 gatgacttctaattgtatgatatttttagctaagttttggagtctttatcttctcatttgagaacattctagaggttttagagtgagtt 626  Q
    |||||||||| || |||||||||||||  ||| ||| | |||||||  |||| ||||| |||||| |||||||| ||||||||||||||    
T  38656558 gatgacttctcatcgtatgatattttt--ctatgttatcgagtcttg-tcttgtcattggagaactttctagagattttagagtgagtt 38656643  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 45691634 - 45691579
Alignment:
Q  167 aatttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaataat 222  Q
    ||||| ||| ||| |||||||||||||||| ||||||||||||||||| |||||||    
T  45691634 aatttttatgagggtatatttgtaaaaatattcaaaaaattacaacaactaataat 45691579  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 28165152 - 28165109
Alignment:
Q  173 tataaggctatatttgtaaaaatagtcaaaaaattacaacaatt 216  Q
    ||||||| |||||||||||||||| |||||||||||||| ||||    
T  28165152 tataagggtatatttgtaaaaatattcaaaaaattacaataatt 28165109  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 51120740 - 51120694
Alignment:
Q  176 aaggctatatttgtaaaaatagtcaaaaaattacaacaattaataat 222  Q
    |||| |||||||||||||||| | ||| |||||||||||||||||||    
T  51120740 aaggttatatttgtaaaaatatttaaagaattacaacaattaataat 51120694  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 36437229 - 36437180
Alignment:
Q  170 ttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 219  Q
    |||||||||| |||||||||||||||  | ||||| ||||||||||||||    
T  36437229 ttctataagggtatatttgtaaaaatgtttaaaaagttacaacaattaat 36437180  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 46101205 - 46101155
Alignment:
Q  169 tttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 219  Q
    ||||||||||| |||||||||||||||| | |||||| |||||||||||||    
T  46101205 tttctataagggtatatttgtaaaaatatttaaaaaactacaacaattaat 46101155  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 13027917 - 13027972
Alignment:
Q  167 aatttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaataat 222  Q
    ||||||||| ||| |||||||||||||||| ||||||| || ||||||| ||||||    
T  13027917 aatttctatgaggatatatttgtaaaaatattcaaaaagttgcaacaatgaataat 13027972  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 731 - 780
Target Start/End: Original strand, 37081799 - 37081848
Alignment:
Q  731 aatcatgtaattggaaaaagacagacacctcatagaagttatggaagcta 780  Q
    |||||||||||| || ||||  ||||||||||| ||||||||||||||||    
T  37081799 aatcatgtaattcgacaaagcaagacacctcatggaagttatggaagcta 37081848  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 30105638 - 30105596
Alignment:
Q  181 tatatttgtaaaaatagtcaaaaaattacaacaattaataata 223  Q
    |||||||||||||||  | ||||||||||||||||||||||||    
T  30105638 tatatttgtaaaaatgtttaaaaaattacaacaattaataata 30105596  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 2950189 - 2950135
Alignment:
Q  165 acaatttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 219  Q
    ||||||| ||| ||| |||||||||||||||| |||||||||||||  |||||||    
T  2950189 acaatttttatcaggatatatttgtaaaaatattcaaaaaattacattaattaat 2950135  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 5428831 - 5428869
Alignment:
Q  181 tatatttgtaaaaatagtcaaaaaattacaacaattaat 219  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  5428831 tatatttgtaaaaatatttaaaaaattacaacaattaat 5428869  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 24789953 - 24789915
Alignment:
Q  181 tatatttgtaaaaatagtcaaaaaattacaacaattaat 219  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  24789953 tatatttgtaaaaatatttaaaaaattacaacaattaat 24789915  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 606647 - 606598
Alignment:
Q  170 ttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 219  Q
    |||||||||| |||||||||||||||  | ||||| ||||||||||||||    
T  606647 ttctataagggtatatttgtaaaaatgtttaaaaagttacaacaattaat 606598  T

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Target: scaffold1809 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 527 - 478
Alignment:
Q  170 ttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 219  Q
    |||||||||| |||||||||||||||  | ||||| ||||||||||||||    
T  527 ttctataagggtatatttgtaaaaatctttaaaaagttacaacaattaat 478  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 3629239 - 3629190
Alignment:
Q  170 ttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 219  Q
    |||||||||| |||||||||||||||  | ||||| ||||||||||||||    
T  3629239 ttctataaggttatatttgtaaaaatgtttaaaaagttacaacaattaat 3629190  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 46918493 - 46918444
Alignment:
Q  170 ttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 219  Q
    |||||||||| |||||||||||||||  | ||||| ||||||||||||||    
T  46918493 ttctataagggtatatttgtaaaaatgtttaaaaatttacaacaattaat 46918444  T

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