View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_28 (Length: 609)
Name: NF0812_low_28
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 225 - 580
Target Start/End: Original strand, 36533921 - 36534275
Alignment:
| Q |
225 |
tttatatgagctgttgttgtggtatggaacaaaaaatgaacatggttaatttgtgtcctcaaattaatcaccaatcacacaaaaaatgaacattgcttca |
324 |
Q |
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| T |
36533921 |
tttatatgagctgttgttgtggtatggaacaaaaaatgaacatggttaatttgtgtcctcaaattaatcaccaatcacacaaaaaatgaacattg-ttca |
36534019 |
T |
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| Q |
325 |
tattcatatttttcccattttctgttgtggtgcatagtgcatggttaattaattaatggcaagtggtaatggtagtaataggaacccacaagcaataaat |
424 |
Q |
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| T |
36534020 |
tattcatatttttcccattttctgttgtggtgtatagtgcatggttaattaattaatggcaagtggtaatggtagtaataggaacccacaagcaataaat |
36534119 |
T |
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| Q |
425 |
caatcacgtaaggtaatggtggtggctgatccaacacgtgaatcagctggagcacttcaatatgcactttgtcacgctgtaatggaacaagatgaattga |
524 |
Q |
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| T |
36534120 |
caatcacgtaaggtaatggtggtggctgatccaacacgtgaatcagctggagcacttcaatatgcactttgtcacgctgtaatggaacaagatgaattga |
36534219 |
T |
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| Q |
525 |
ttttattacatgttattgagaacacaagttcatggcgcaatactctttcaacgttt |
580 |
Q |
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| T |
36534220 |
ttttattacatgttattgagaacacaagttcatggcgcaatactctttcaacgttt |
36534275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 36533704 - 36533843
Alignment:
| Q |
13 |
aatataattacaagagaaaattgactttagaaaagaattttgagagacatatatgtattgcatatatgagcacacaaatagaggtaaaaatagggtggca |
112 |
Q |
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| T |
36533704 |
aatataattacaagagaaaattgactttagaaaagaattttgagagacatatatgtattgcatatatgagcacacaaatagaggtaaaaatagggtggca |
36533803 |
T |
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| Q |
113 |
tttgaccgagtcttgaggaaggtgtgtttaaacgtagcat |
152 |
Q |
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| T |
36533804 |
tttgaccgagtcttgaggaaggtgtgtttaaacgtagcat |
36533843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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