View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_29 (Length: 593)

Name: NF0812_low_29
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_29
NF0812_low_29
[»] chr7 (5 HSPs)
chr7 (369-564)||(9939883-9940078)
chr7 (209-368)||(40647109-40647268)
chr7 (287-365)||(45849595-45849673)
chr7 (276-368)||(11362005-11362097)
chr7 (234-368)||(21373653-21373787)
[»] chr6 (5 HSPs)
chr6 (206-368)||(7863966-7864129)
chr6 (276-368)||(4058995-4059087)
chr6 (23-62)||(7863802-7863841)
chr6 (59-117)||(7863802-7863860)
chr6 (234-368)||(11764201-11764335)
[»] chr4 (3 HSPs)
chr4 (206-368)||(9110256-9110419)
chr4 (209-345)||(7653898-7654034)
chr4 (298-341)||(17394645-17394688)
[»] chr3 (2 HSPs)
chr3 (227-368)||(20592984-20593125)
chr3 (302-368)||(45914028-45914094)
[»] chr5 (3 HSPs)
chr5 (266-368)||(21905804-21905906)
chr5 (209-299)||(22620184-22620274)
chr5 (301-368)||(25801366-25801433)
[»] chr2 (1 HSPs)
chr2 (302-368)||(19677722-19677788)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 369 - 564
Target Start/End: Complemental strand, 9940078 - 9939883
Alignment:
Q  369 ccctcactatgaggtggtggctccgttcttagtaagtattatagctttgatttaaaagacatctacgtgatgttagacaactctaatatatgttttaact 468  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  9940078 ccctcactatgaggtggtggctccgtccttagtaagtattatagctttgatttaaaagacatctacgtgatggtagacaattctaatatatgttttaact 9939979  T
Q  469 attgttgtcttgatcgtaacgacataaatgttaaaattaattttgttgttgaagtatagaggtattatactcgtctattatgttgggtatggtatc 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9939978 attgttgtcttgatcgtaacgacataaatgttaaaattaattttgttgttgaagtatagaggtattatactcgtctattatgttgggtatggtatc 9939883  T

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Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 209 - 368
Target Start/End: Original strand, 40647109 - 40647268
Alignment:
Q  209 ttggtttggaaactttaattttgacaaatagtttttaaatgggttcaaacgatttaatatcattacaagttaaaaactttccttacacccaactttttaa 308  Q
    |||||||||||  || |||||||| |||||||||||||||||| | |||| |||||||||||||| |||||||||| || | ||||||||| ||||||||    
T  40647109 ttggtttggaactttgaattttgataaatagtttttaaatggggtgaaacaatttaatatcattagaagttaaaaatttccattacacccagctttttaa 40647208  T
Q  309 gtcatgtggatagcaatccatttaaaatccttgatttaataagtgtattttatactagtg 368  Q
    ||||||||||||||||  ||||||||||||| |||||||||||||| |||| ||||||||    
T  40647209 gtcatgtggatagcaactcatttaaaatcctagatttaataagtgttttttgtactagtg 40647268  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 45849673 - 45849595
Alignment:
Q  287 ttccttacacccaactttttaagtcatgtggatagcaatccatttaaaatccttgatttaataagtgtattttatacta 365  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||| |||||    
T  45849673 ttccttacacccagctttttaagtcgtgtggatagcaacccatttaaaatcctagatttaataagtgttttttgtacta 45849595  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 276 - 368
Target Start/End: Complemental strand, 11362097 - 11362005
Alignment:
Q  276 agttaaaaactttccttacacccaactttttaagtcatgtggatagcaatccatttaaaatccttgatttaataagtgtattttatactagtg 368  Q
    ||||||||||||||| |||||||| | |||||||||| ||||||| ||| |||||||||||||| ||| |||||||||| |||| ||||||||    
T  11362097 agttaaaaactttccctacacccagcattttaagtcaggtggataacaacccatttaaaatcctagatgtaataagtgttttttgtactagtg 11362005  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 21373653 - 21373787
Alignment:
Q  234 aaatagtttttaaatgggttcaaacgatttaatatcattacaagttaaaaactttccttacacccaactttttaagtcatgtggatagcaatccatttaa 333  Q
    |||||| ||||||||||| | |||| ||||||||||  | ||||| |||| | | || | ||||||  ||||||| ||  ||||||| ||| ||| ||||    
T  21373653 aaatagattttaaatggggttaaaccatttaatatctattcaagtcaaaatcctcccctgcacccatgtttttaaatctggtggataacaacccacttaa 21373752  T
Q  334 aatccttgatttaataagtgtattttatactagtg 368  Q
    || |||||| ||||||||||| ||||  |||||||    
T  21373753 aaaccttgacttaataagtgttttttgcactagtg 21373787  T

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Target: chr6 (Bit Score: 124; Significance: 2e-63; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 206 - 368
Target Start/End: Original strand, 7863966 - 7864129
Alignment:
Q  206 cacttggtttggaaacttt-aattttgacaaatagtttttaaatgggttcaaacgatttaatatcattacaagttaaaaactttccttacacccaacttt 304  Q
    ||||||||||||||||||| |||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  7863966 cacttggtttggaaactttgaattttgacaaatacttttaaaatggggtcaaacgatttaatatcattacaagttaaaaactttccttgcacccagcttt 7864065  T
Q  305 ttaagtcatgtggatagcaatccatttaaaatccttgatttaataagtgtattttatactagtg 368  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||    
T  7864066 ttaagtcatgtggatagcaacccatttaaaatccttgatttaataagtatattttgtactagtg 7864129  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 276 - 368
Target Start/End: Complemental strand, 4059087 - 4058995
Alignment:
Q  276 agttaaaaactttccttacacccaactttttaagtcatgtggatagcaatccatttaaaatccttgatttaataagtgtattttatactagtg 368  Q
    |||||||||||||||||||||||| | |||||||||| ||||||| ||| |||||||||||||| ||| |||||||||| |||| ||||||||    
T  4059087 agttaaaaactttccttacacccagcattttaagtcaggtggataacaacccatttaaaatcctagatgtaataagtgttttttgtactagtg 4058995  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 7863802 - 7863841
Alignment:
Q  23 ttggagttcaatcgattggtgtttggtggagttcgattgg 62  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  7863802 ttggagttcgatcgattggtgtttggtggagttcgattgg 7863841  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 7863802 - 7863860
Alignment:
Q  59 ttggagttcaatcgattggtgtttggtggagttcgatcgattcgtggtggagttcgatc 117  Q
    ||||||||| ||||||||||||||||||||||||||| | |   |||||||||||||||    
T  7863802 ttggagttcgatcgattggtgtttggtggagttcgattggtgtttggtggagttcgatc 7863860  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 11764335 - 11764201
Alignment:
Q  234 aaatagtttttaaatgggttcaaacgatttaatatcattacaagttaaaaactttccttacacccaactttttaagtcatgtggatagcaatccatttaa 333  Q
    |||||| ||||||||||| | |||| ||||||||||  | ||||| |||| | | || | ||||||  ||||||| ||  ||||||| ||| ||| ||||    
T  11764335 aaatagattttaaatggggttaaaccatttaatatctattcaagtcaaaatcctcccctgcacccatgtttttaaatctggtggataacaacccacttaa 11764236  T
Q  334 aatccttgatttaataagtgtattttatactagtg 368  Q
    || |||||| ||||||||||| ||||  |||||||    
T  11764235 aaaccttgacttaataagtgttttttgcactagtg 11764201  T

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Target: chr4 (Bit Score: 120; Significance: 4e-61; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 206 - 368
Target Start/End: Original strand, 9110256 - 9110419
Alignment:
Q  206 cacttggtttggaaacttt-aattttgacaaatagtttttaaatgggttcaaacgatttaatatcattacaagttaaaaactttccttacacccaacttt 304  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||| | |||||| ||||    
T  9110256 cacttggtttgaaaactttgaattttgacaaatagtttttaaatggggtcaactgatttaatatcattacaagttaaaaactttccctgcacccagcttt 9110355  T
Q  305 ttaagtcatgtggatagcaatccatttaaaatccttgatttaataagtgtattttatactagtg 368  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  9110356 ttaagtcatgtggatagcaacccatttaaaatccttgatttaataagtgtattttgtactagtg 9110419  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 209 - 345
Target Start/End: Original strand, 7653898 - 7654034
Alignment:
Q  209 ttggtttggaaactttaattttgacaaatagtttttaaatgggttcaaacgatttaatatcattacaagttaaaaactttccttacacccaactttttaa 308  Q
    |||||||||||  || |||||||| |||||||||||||||||| | |||| |||||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  7653898 ttggtttggaactttgaattttgataaatagtttttaaatgggataaaacaatttaataccattagaagttaaaaactttccttacacccagctttttaa 7653997  T
Q  309 gtcatgtggatagcaatccatttaaaatccttgattt 345  Q
     |||| |||||| ||| |||||||||||||| |||||    
T  7653998 atcatttggataacaacccatttaaaatcctagattt 7654034  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 341
Target Start/End: Original strand, 17394645 - 17394688
Alignment:
Q  298 caactttttaagtcatgtggatagcaatccatttaaaatccttg 341  Q
    ||||||||||||||||||||||| ||| ||| ||||||||||||    
T  17394645 caactttttaagtcatgtggatatcaacccacttaaaatccttg 17394688  T

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Target: chr3 (Bit Score: 98; Significance: 6e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 227 - 368
Target Start/End: Original strand, 20592984 - 20593125
Alignment:
Q  227 ttttgacaaatagtttttaaatgggttcaaacgatttaatatcattacaagttaaaaactttccttacacccaactttttaagtcatgtggatagcaatc 326  Q
    |||||| |||||||||||||||||| | |||| ||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  20592984 ttttgataaatagtttttaaatggggtgaaacaatttaatatcattagtagttaaaaactttccttacacccagctttttaagtcatgtggatagcaagc 20593083  T
Q  327 catttaaaatccttgatttaataagtgtattttatactagtg 368  Q
    ||||||||||||| |||||||||||||| |||| ||||||||    
T  20593084 catttaaaatcctagatttaataagtgttttttgtactagtg 20593125  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 368
Target Start/End: Original strand, 45914028 - 45914094
Alignment:
Q  302 tttttaagtcatgtggatagcaatccatttaaaatccttgatttaataagtgtattttatactagtg 368  Q
    ||||||| ||| ||||||||| | ||||||||||||  ||||||||||||||| |||| ||||||||    
T  45914028 tttttaaatcaggtggatagccacccatttaaaatctctgatttaataagtgttttttgtactagtg 45914094  T

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Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 21905804 - 21905906
Alignment:
Q  266 tatcattacaagttaaaaactttccttacacccaactttttaagtcatgtggatagcaatccatttaaaatccttgatttaataagtgtattttatacta 365  Q
    |||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||  |||||||||||||| |||||||||||||| |||| |||||    
T  21905804 tatcattagaagttaaaaattttccttacacctaactttttaagtcatgtggatagcatcccatttaaaatcctagatttaataagtgttttttgtacta 21905903  T
Q  366 gtg 368  Q
    |||    
T  21905904 gtg 21905906  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 22620274 - 22620184
Alignment:
Q  209 ttggtttggaaactttaattttgacaaatagtttttaaatgggttcaaacgatttaatatcattacaagttaaaaactttccttacaccca 299  Q
    |||||||||||  || |||||| | |||||||||||||||||| | |||| |||||||||||||| |||||||||||||| ||||||||||    
T  22620274 ttggtttggaactttaaattttaataaatagtttttaaatgggatgaaacaatttaatatcattagaagttaaaaacttttcttacaccca 22620184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 25801433 - 25801366
Alignment:
Q  301 ctttttaagtcatgtggatagcaatccatttaaaatccttgatttaataagtgtattttatactagtg 368  Q
    |||||||| ||| ||||||||||| |||||||||||  |||| |||| |||||| |||| ||||||||    
T  25801433 ctttttaaatcaagtggatagcaacccatttaaaatgtttgaattaaaaagtgttttttgtactagtg 25801366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 368
Target Start/End: Original strand, 19677722 - 19677788
Alignment:
Q  302 tttttaagtcatgtggatagcaatccatttaaaatccttgatttaataagtgtattttatactagtg 368  Q
    ||||||| ||| ||||||||| | ||||||||||||  ||||||||||||||| |||| ||||||||    
T  19677722 tttttaaatcaggtggatagccacccatttaaaatctctgatttaataagtgttttttgtactagtg 19677788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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