View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_3 (Length: 833)
Name: NF0812_low_3
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 709; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 709; E-Value: 0
Query Start/End: Original strand, 76 - 804
Target Start/End: Complemental strand, 4687437 - 4686709
Alignment:
| Q |
76 |
ctttcaattactatacctattaaatataaaagttagttatactaactagtgtaactgacagctataactaacttttttatttctaataatctcagtcaca |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4687437 |
ctttcaattactatacctattaaatataaaagttagttatactaactagtgtaactgacagctataactaacttttttatttctaataatctcagtcaca |
4687338 |
T |
|
| Q |
176 |
atatcaaatattttaacctcttttgtaatcacaaccaactgtgttttatcgtaattttcatacaagaaattcccttatgtatgatgttgccaacatttca |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4687337 |
atatcaaatattttaacctcttttgtaatcacaaccaactgtgttttatcgtaattttcatacaagaaattcccttatgtatgatgttgccaacatttca |
4687238 |
T |
|
| Q |
276 |
aattataagacaaaggataatgtaatagcaaccaaaagaaatatacaaaaacaatagtccgagaaaacacattgccattcataaaaaagaaatatgagta |
375 |
Q |
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| T |
4687237 |
aattataagacaaaggataatgtaatagcaaccaaaagaaatatacaaaaacaatagtccgagaaaacacattgccgttcataaaaaagaaatatgagta |
4687138 |
T |
|
| Q |
376 |
gacatatatccaatcttattgtctgtaataataaacttcaaacaaaacaatgactaataccagaaattaacaataatgtacacaatgttattagttactc |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4687137 |
gacatatatccaatcttattgtctgtaataataaacttcaaacaaaacaatgactaataccagaaattaacaataatgtacacaatgttattagttactc |
4687038 |
T |
|
| Q |
476 |
tgaattttgtaacctcattcttttaaattgcaaatcacaattgcagccacaacataaaggattttgaggtgtccgcaacgacatagtaactgcaatttcg |
575 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
4687037 |
tgaattttgtaacctcattcttttaaattgcaaatcacaattgcagccacaacataaaggattttgaggtgtccgcaacggcatagtaacttcaatttcg |
4686938 |
T |
|
| Q |
576 |
attgcatcgacatcattttgttgcaatatgaaggttcacaacataaccgcaatttaaaaccactaatcttacctcacaaatcacaacttaaccttggtat |
675 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4686937 |
attgcatcgacatcattttgttgcaatatgaaggttcacaacataaccgcaatttaaaaccactaatcttacctcacaaatcacaacttaaccttggtat |
4686838 |
T |
|
| Q |
676 |
ttcgaatcaagaggatgatgataacttgaagtggtagcttcactccaattagtgctagaaccttgtatcttattatgatcaatattcaagtcttcttcac |
775 |
Q |
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|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4686837 |
tttgaatcaagaggatgatgataagttgaagtggtagcttcactccaattagtgctagaaccttgtatcttattatgatcaatattcaagtcttcttcac |
4686738 |
T |
|
| Q |
776 |
cataaaagaattccaacccatcaaatctt |
804 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
4686737 |
cataaaagaattccaacccatcaaatctt |
4686709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 4687513 - 4687468
Alignment:
| Q |
16 |
atctaatgcatagagaagactataatacaccatgcatatccatata |
61 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4687513 |
atctaatgcatagagaagactataatacaccatgcttatccatata |
4687468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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