View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_31 (Length: 578)
Name: NF0812_low_31
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 2e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 357 - 570
Target Start/End: Original strand, 32642384 - 32642603
Alignment:
| Q |
357 |
gcaataacacctgcaccatattgtgtcatgtacaatacacaattatgatgatgatatgtttttctttaccctctatannnnnnncttagattatggtata |
456 |
Q |
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| T |
32642384 |
gcaataacacctgcaccatattgtgtcatgtacaatacacaattatgatgatgatatgtttttctttaccctctatatttttttcttagattatggtata |
32642483 |
T |
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| Q |
457 |
tgtgtgt------aatgtaatatgttattgattttctaataaggtcctaaggttttggagagagagtggaaagaagggtcacatggggagggatattaga |
550 |
Q |
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| T |
32642484 |
tgtgtgtaagtgtaatgtaatatgttattgattttctaataaggtcctaaggttttggagagagagtggaaagaagggtcacatggggagggatattaga |
32642583 |
T |
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| Q |
551 |
gacagctagcaacagctagg |
570 |
Q |
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| T |
32642584 |
gacagctagcaacagctagg |
32642603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 32642061 - 32642227
Alignment:
| Q |
30 |
ctttgttgaggaaaatatggccaattttgaggtatggtacttggtattttaggaggtaactgtgccattaatcccaatgagtatgtgtgaccccaaatat |
129 |
Q |
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| T |
32642061 |
ctttggtgaggaaaatatggccaattttggggtatggtacttggtattttaggaggtaactgtgccattaatcccaatgagtatgtgtgaccccaaatat |
32642160 |
T |
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| Q |
130 |
agaggaagtttaaccgaaatttttggtattgtgttgtgttatgtatcttataagtgtttgtgttttt |
196 |
Q |
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| T |
32642161 |
agaggaagtttaaccgaaatttttggtattgtgttgtgttatgtatcttataagtgtttgtgttttt |
32642227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 32642262 - 32642340
Alignment:
| Q |
231 |
tctcaacaacctaaccaacacacaaacaaccgcaaatctttacttcaaaatcttgttctcgggcttctaaaagtagtgg |
309 |
Q |
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| T |
32642262 |
tctcaacaacctaaccaacacacaaacaaccgcaaatctttacttcaaaatcttgttctcgggcttctaaaagtagtgg |
32642340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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