View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_32 (Length: 572)
Name: NF0812_low_32
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 9 - 543
Target Start/End: Original strand, 35665913 - 35666447
Alignment:
| Q |
9 |
agcagagataaaagacacatcaaagaacattaggatgtggcttggtacctataaaactgctgaggaagctgctcgagcttacgatgaagctgcttttctc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35665913 |
agcagagataaaagacacatcaaagaacattaggatgtggcttggtacctataaaactgctgaggaagctgctcgagcttacgatgaagctgcttttctc |
35666012 |
T |
|
| Q |
109 |
cttagaggtacaaacactcgcaccaatttctctactactcattccatccctaccaattctccaatatctctcaaactgaaaaacctacttcatcgtaaat |
208 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35666013 |
cttagaggtacaaatactcgtaccaatttctctactactcattccatccctaccaattctccaatatctctcaaactgaaaaacctacttcatcgtaaat |
35666112 |
T |
|
| Q |
209 |
ccatctcaaatctaagtcaaagtaaaaatcagtgcactttgatgagttcctctttacaaggcgctcctattgataatagcatcatggtaatggaaaatga |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35666113 |
ccatctcaaatctaagtcaaagtaaaaatcagtgcactttgatgagttcctctttacaaggtgctcctattgataatagcatcatggtaatggaaaatga |
35666212 |
T |
|
| Q |
309 |
aaacaaatcttcatgtagtagtgaagagtcaaagtcttcgttttgggttcagaaccaattagtatctgaatataatccttatggggtggatatgaatatg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35666213 |
aaacaaatcttcatgtagtagtgaagagtcaaagtctttgttttgggttcagaaccaattagtatctgaatataatccttatggggtggatatgaatatg |
35666312 |
T |
|
| Q |
409 |
atgaactgctcaatgggtattacaccaaatacattacagattgattattcttggccattacctcaacaaaggattaacgagttaccaacactaaatgata |
508 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35666313 |
atgaactgctcaattggtattacaccaaatacattacagattgattattcttggccattacctcaacaaaggattaacgagttaccaacactaaatgata |
35666412 |
T |
|
| Q |
509 |
gtgtgaatgtatatggtatgaatgagtgctatgtg |
543 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
35666413 |
gtgtgaatgtatatggtatgaatgagtgctatgtg |
35666447 |
T |
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