View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_34 (Length: 564)
Name: NF0812_low_34
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 225 - 557
Target Start/End: Complemental strand, 55321409 - 55321080
Alignment:
| Q |
225 |
gttaaacatgcaatcagggtaggaattagtgaatgatctcaagtcagttatccttgcacaataaggtaaattaattttgaatgtctaatctttcttagat |
324 |
Q |
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| T |
55321409 |
gttaaacatgcaatcagggcaggaattagtgaatgatctcaagtcagttatccttgcacaataaggtaaattaattttgaatgtctaatctttcttagat |
55321310 |
T |
|
| Q |
325 |
gtatagtgcagtggaaatttggagtctttagaatgaacgaaaagtagcttgcttttctcttggttagcaccatttttatttcgattgtcatgatagcccc |
424 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
55321309 |
gtatagtgcagtggaaatttggagtctttagaatgaatgaaaagtagcttgcttttctcttggttagcaccatttttatttcgattgtc---atagcccc |
55321213 |
T |
|
| Q |
425 |
agtattattacttgattagtattatttgtttaatgttatagtgatttatagtgtctttcaagctataatatattagttttgttgtttttaaattacagac |
524 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55321212 |
agtattattacttgattagtattatttgtttgatgttatagtgatttatagtgtctttcaagctataatatattagttttgttgtttttaaattacagac |
55321113 |
T |
|
| Q |
525 |
tgaaatagtttctcccaaaaagtagtattatct |
557 |
Q |
| |
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|||||||||||||||||||||||| ||| |||| |
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| T |
55321112 |
tgaaatagtttctcccaaaaagtaatataatct |
55321080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 55321876 - 55321757
Alignment:
| Q |
31 |
ataagactataagatctcattatttatataaaagtattatggttattcaaatttataattgttcttttgtacaaattcaggagttcgagaagaagataaa |
130 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55321876 |
ataagactataagatctcattatttatataaa-gtattatggttattcaaatttataattgttcttttgtacaaattcaggagttcgagaagaagataaa |
55321778 |
T |
|
| Q |
131 |
tgaaatatctatcttgaattg |
151 |
Q |
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||||||||||||||||||||| |
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| T |
55321777 |
tgaaatatctatcttgaattg |
55321757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 33321565 - 33321594
Alignment:
| Q |
29 |
aaataagactataagatctcattatttata |
58 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
33321565 |
aaataagactataagatctcattatttata |
33321594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 29595574 - 29595545
Alignment:
| Q |
29 |
aaataagactataagatctcattatttata |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
29595574 |
aaataagactataagatctcattatttata |
29595545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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