View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_35 (Length: 549)
Name: NF0812_low_35
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 394
Target Start/End: Complemental strand, 53603867 - 53603470
Alignment:
| Q |
9 |
gagatgaacttgtaaattgtaattagcaatagagtagcaaaagacatacccatgaggaccatgctatgctgtaaatgaacatctgcattcaatttgatag |
108 |
Q |
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| T |
53603867 |
gagatgaacttgtaaattgtaattagcaatagagtagcaaaagacatacccatgaggaccatgctatgctgtaaatgaacatctgcattcaatttgatag |
53603768 |
T |
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| Q |
109 |
cactaatttagaatttacaaaaatgtgtannnnnnnnnn-acttataaaattacaaagggataaatgcttacatgtacacagtgaaaaaagagtccaatc |
207 |
Q |
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| T |
53603767 |
cactaatttagaatttacaaaaatgtgtatttttttttttacttataaaattacaaaaggataaatgcttacatgtacacagtgaaaaaagagtccaatc |
53603668 |
T |
|
| Q |
208 |
gatagaagccttgcctcgcccaaagtaggagcaaaaataggcataagaaaaagctgtgatcaacaatgtttgataattaata-tttacaataaactcaaa |
306 |
Q |
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| T |
53603667 |
gatagaagccttgcctcgcccaaagtaggagcaaaaataggcataagaaaaagctgtgatcaacaatgtttgat-attaatattttacaataaactcaaa |
53603569 |
T |
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| Q |
307 |
caaattgtagatttgacaagaca-----------aaacataggtgatatttgacaactaaaatcacttcttacaaaaattacctgtgacacagtccctg |
394 |
Q |
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| T |
53603568 |
caaattgtagatttgacaagacaaaacgtaaactaaacataggtgatatttgacaactaaaatcacgtcttacaaaaattacctgtgacacagtccctg |
53603470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 39170530 - 39170622
Alignment:
| Q |
32 |
tagcaatagagtagcaaaagacatacccatgaggaccatgctatgctgtaaatgaacatctgcattcaatttgatagcactaatttagaattt |
124 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||| |||||||||| ||||| |
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| T |
39170530 |
tagcaatagagtagctaaagacatacccaagaggaccatgctatactgtaaatgaacatctacattcaatttgataacactaatttataattt |
39170622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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