View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_36 (Length: 540)
Name: NF0812_low_36
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 30 - 450
Target Start/End: Original strand, 35405079 - 35405499
Alignment:
| Q |
30 |
gaaatgtctgaatatatgtggaaatttactttctagctagttctttacattggaggtgcaacatcaaaataaaagaaagatgcaacgttattctgtcaga |
129 |
Q |
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| T |
35405079 |
gaaatgtctgaatatatgtggaaatttactttctagctagttttttacattgcaggtgcaacatcaaaataaaagaaagatgcaacgttattctgtcaga |
35405178 |
T |
|
| Q |
130 |
ctcaaactccaaaatgaacaagcaagaagttcttatgctgcattgctcagttgctcatgtttattcacttgttagaaataaaatctcatgattgtttgct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35405179 |
ctcaaactccaaaatgaacaagcaagaagttcttatgctgcattgctcagttgctcatgtttattcacttgttagaaataaaatctcatgattgtttgct |
35405278 |
T |
|
| Q |
230 |
ttaaaagacacttgatagcactttcttatgaatacatgatgagttgatcactttataaatatttgtttcatagaagaaaagaccttaggatataaaaagc |
329 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35405279 |
ttaaaagaaacttgatagcactttcttatgaatacatgatgagttgatcactttataaatatttgtttcatagaagaaaagaccttaggatataaaaagc |
35405378 |
T |
|
| Q |
330 |
tccttgagatttcaattccaaagttgttggttttgattggacagagttttgcaacatataaaatactcacacgatggaagaggttatatgcagcatagat |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35405379 |
tccttgagatttcaattccaaagttgttggttttgattggacagagttttgcaacatataaaatactcacacgatggaagaggttatatgcagcatagat |
35405478 |
T |
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| Q |
430 |
ttcaatctcatagtagttgat |
450 |
Q |
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| T |
35405479 |
ttcaatctcatagtagttgat |
35405499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 224 - 439
Target Start/End: Original strand, 35400480 - 35400695
Alignment:
| Q |
224 |
tttgctttaaaagacacttgatagcactttcttatgaatacatgatgagttgatcactttataaatattt-gtttcatagaagaaaagaccttaggatat |
322 |
Q |
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||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||| |
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| T |
35400480 |
tttgcgttgaaagaaacttgatagcactttcttatgaatacatgatgagttgatcactttataaatattttgtttcatagaagaaaaaac-ttaggatat |
35400578 |
T |
|
| Q |
323 |
aaaaagctccttgagatttcaattccaaagttgttggttttgattggacagagttttgcaacatataaaatactcacacgatggaagaggttatatgcag |
422 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||| |||| ||||||| |||||| ||||||||| | ||||| ||||||||||||| |
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| T |
35400579 |
aaaaagctccgtgagatttcaattccaatgttgttggttttgatttgacacagttttgtaacatagtaaatactcaaatgatgggggaggttatatgcaa |
35400678 |
T |
|
| Q |
423 |
catagatttcaatctca |
439 |
Q |
| |
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||||||||||||||||| |
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| T |
35400679 |
catagatttcaatctca |
35400695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 64 - 229
Target Start/End: Original strand, 35400175 - 35400339
Alignment:
| Q |
64 |
agctagttctttacattggaggtgcaacatcaaaataaaagaaagatgcaacgttattctgtcagactcaaactccaaaatgaacaagcaagaagttctt |
163 |
Q |
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||||||||||| || ||| ||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| ||||| |
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| T |
35400175 |
agctagttctt-actttgaaggtgcaacatcaaaataaaagaaagatgcagtgttattgtgtcagactcaacctccaaaatgaacaagcaagaatttctt |
35400273 |
T |
|
| Q |
164 |
atgctgcattgctcagttgctcatgtttattcacttgttagaaataaaatctcatgattgtttgct |
229 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35400274 |
atgttgcattgctcagttgctcatgtttattcacttgttagaaataaaatctcatgattgtttgct |
35400339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 39638368 - 39638314
Alignment:
| Q |
310 |
gaccttaggatataaaaagctccttgagatttcaattccaaagttgttggttttg |
364 |
Q |
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||||||| ||||| ||||||| | ||| ||||||||||||||||||||| ||||| |
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| T |
39638368 |
gaccttaagatattaaaagcttcatgaaatttcaattccaaagttgttgattttg |
39638314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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