View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_39 (Length: 531)
Name: NF0812_low_39
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 113 - 521
Target Start/End: Original strand, 34519369 - 34519777
Alignment:
| Q |
113 |
tcacggatgatcaaaaccaaaaccatgatatcaatatcacattattttcgcttttcacattgtttccccttctcctatgtttttatgtcttccatatttt |
212 |
Q |
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| T |
34519369 |
tcacggatgatcaaaaccaaaaccatgatatcaatatcacattattttcgcttttcacattgtttccccttctcctatgtttttatgtcttccatatttt |
34519468 |
T |
|
| Q |
213 |
aaagaagttgtaattatgataagatatcttttgattacgaaccgaaatctcaccaattgcatcataaacaaaccgattaaagaaaatgtgtttgaactac |
312 |
Q |
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| T |
34519469 |
aaagaagttgtaattatgataagatatcttttgattacgaaccgaaatctcaccaattgcatcataaacaaaccgattaaagaaaatgtgtttgaactac |
34519568 |
T |
|
| Q |
313 |
ttgccgtatcaatatgttttgtatagaagatagattaaaatcctaataaacaagcattgaacattgatggaagattgatataatgtctctctattttaca |
412 |
Q |
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| T |
34519569 |
ttgccatatcaatatgttttgtatagaagatagattaaaatcctaataaacaagcattgaacattgatggaagattgatataatgtctctctattttaca |
34519668 |
T |
|
| Q |
413 |
gggatcattagcccatgaaggtctgggccctgtttcttggtggtgatgaattcattccctggttttattcattttcaagattatgcttttagaagaaatt |
512 |
Q |
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| T |
34519669 |
gggatcattagctcatgaaggtctgggccctgtttcttggtggtgatgaattcattccctggttttattcattttcaagattgtgcttttagaagaaatt |
34519768 |
T |
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| Q |
513 |
ggtcctttg |
521 |
Q |
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| T |
34519769 |
ggtcctttg |
34519777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 163 - 334
Target Start/End: Original strand, 30739609 - 30739778
Alignment:
| Q |
163 |
cttttcacattgtttccccttctcctatgtttttatgtcttccatattttaaagaagttgtaattatgataagatatcttttgattacgaaccgaaatct |
262 |
Q |
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|||||||||| |||||| |||||||||||||||||||||| |||||||||||| ||| ||||||| || |||| || ||||| |||||||||||| |
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| T |
30739609 |
cttttcacatcgtttcctcttctcctatgtttttatgtctctcatattttaaagcagtcataattataatcttatatgtt--gattatgaaccgaaatct |
30739706 |
T |
|
| Q |
263 |
caccaattgcatcataaacaaaccgattaaagaaaatgtgtttgaactacttgccgtatcaatatgttttgt |
334 |
Q |
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|| ||||||||||||| ||||| ||| |||||| |||| |||| |||||||| ||||||||| |||||| |
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| T |
30739707 |
cattgattgcatcataaaaaaaccaattcaagaaatcgtgtatgaattacttgccatatcaatatcttttgt |
30739778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 402 - 500
Target Start/End: Original strand, 30739863 - 30739961
Alignment:
| Q |
402 |
tctattttacagggatcattagcccatgaaggtctgggccctgtttcttggtggtgatgaattcattccctggttttattcattttcaagattatgctt |
500 |
Q |
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||||||||||||||||||||| ||||||||| |||| ||||||||||||||| |||||||||||||| | ||||||||||||||||||||| |||| |
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| T |
30739863 |
tctattttacagggatcattatatcatgaaggtttgggacctgtttcttggtggcaatgaattcattcccagcttttattcattttcaagattacgctt |
30739961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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