View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_41 (Length: 522)

Name: NF0812_low_41
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_41
NF0812_low_41
[»] chr4 (3 HSPs)
chr4 (39-299)||(29855216-29855476)
chr4 (338-522)||(54686840-54687024)
chr4 (455-498)||(8485764-8485807)
[»] chr3 (2 HSPs)
chr3 (331-522)||(8132400-8132591)
chr3 (323-363)||(23520610-23520650)
[»] chr2 (2 HSPs)
chr2 (298-522)||(13418053-13418277)
chr2 (427-515)||(6825876-6825964)
[»] chr6 (2 HSPs)
chr6 (449-501)||(15676370-15676422)
chr6 (332-515)||(17555703-17555886)
[»] chr8 (2 HSPs)
chr8 (332-417)||(20826728-20826813)
chr8 (302-366)||(29719589-29719653)
[»] chr1 (3 HSPs)
chr1 (329-502)||(21412683-21412856)
chr1 (455-501)||(5500141-5500187)
chr1 (455-501)||(32350875-32350921)
[»] chr7 (1 HSPs)
chr7 (449-506)||(20658460-20658517)


Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 39 - 299
Target Start/End: Original strand, 29855216 - 29855476
Alignment:
Q  39 gttactggttagttaatcaggttagaagattctcagcaagagaaaccattgatttatggagtaaaaatcccaaattgaagaaccctaaaacttaacccta 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29855216 gttactggttagttaatcaggttagaagattctcagcaagagaaaccattgatttatggagtaaaaatcccaaattgaagaaccctaaaacttaacccta 29855315  T
Q  139 gtttgattatttgtttatataaaagtaaagtaatacagaccttgcgagatgcggtgtagactagagaagctctctagcagcttcacgtatggtggttctt 238  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29855316 gtttgattatttgtttgtataaaagtaaagtaatacagaccttgcgagatgcggtgtagactagagaagctctctagcagcttcacgtatggtggttctt 29855415  T
Q  239 ggcggcgagagagggatggaatgggagatgcagagagatagggtttagtgcttcgaaaaca 299  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  29855416 ggcggcgagagagggatggaataggagatgtagagagatagggtttagtgcttcgaaaaca 29855476  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 338 - 522
Target Start/End: Original strand, 54686840 - 54687024
Alignment:
Q  338 ttctcttttaggacaaaaccaccccatcctgaaacctccaaagaattccacttttcactaacaaaattcttatacccaggaacatccatccaacatttca 437  Q
    |||||||| | ||||||||||||||| ||||  || || || || ||||| |||||||| |||||| |||||||||||||||| |||  |||||||||||    
T  54686840 ttctctttcaagacaaaaccaccccaacctgtgacttcaaaggatttccatttttcactgacaaaactcttatacccaggaacttcctgccaacatttca 54686939  T
Q  438 gcatccttgatggcctcggaccccaattctcctcatcaacagacaacaacaacgggcaatgatcagacagaccacgtaacagagc 522  Q
     || ||  || || | |||| ||||||| ||||| || |  | || || ||| || |||||||| ||||| |||||||| |||||    
T  54686940 acaaccgagacggacacggatcccaattttcctcgtctattgtcagcaccaatggacaatgatctgacagtccacgtaaaagagc 54687024  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 498
Target Start/End: Complemental strand, 8485807 - 8485764
Alignment:
Q  455 ggaccccaattctcctcatcaacagacaacaacaacgggcaatg 498  Q
    ||||||||||||||||||||||||||||||| ||| || |||||    
T  8485807 ggaccccaattctcctcatcaacagacaacaccaaaggacaatg 8485764  T

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Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 331 - 522
Target Start/End: Original strand, 8132400 - 8132591
Alignment:
Q  331 tttcaacttctcttttaggacaaaaccaccccatcctgaaacctccaaagaattccacttttcactaacaaaattcttatacccaggaacatccatccaa 430  Q
    |||||| |||||||| | ||||||||||||||||||||  || |||||||| || || ||||||||||||||||||||||| ||||| || |||  ||||    
T  8132400 tttcaatttctctttcaagacaaaaccaccccatcctgtgacttccaaagattttcatttttcactaacaaaattcttatatccaggtacttcctgccaa 8132499  T
Q  431 catttcagcatccttgatggcctcggaccccaattctcctcatcaacagacaacaacaacgggcaatgatcagacagaccacgtaacagagc 522  Q
    ||||||| || ||| || |||||||| |||||||| ||||||||||| | |||||| || || ||||||||||||| ||||||||| |||||    
T  8132500 catttcaacaacctagagggcctcggtccccaattttcctcatcaactgtcaacaataaaggacaatgatcagacaaaccacgtaaaagagc 8132591  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 23520650 - 23520610
Alignment:
Q  323 ttcaacaatttcaacttctcttttaggacaaaaccacccca 363  Q
    ||||||||||| || ||||||||||||||| ||||||||||    
T  23520650 ttcaacaatttaaatttctcttttaggacataaccacccca 23520610  T

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Target: chr2 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 298 - 522
Target Start/End: Original strand, 13418053 - 13418277
Alignment:
Q  298 caaatgccactccttcaacgcaaccttcaacaatttcaacttctcttttaggacaaaaccaccccatcctgaaacctccaaagaattccacttttcacta 397  Q
    ||||||||| |||||||| |||||||| |  | |||||| |||||||| |  |||||||||||||| ||||  || |||||| | ||||| ||||||||     
T  13418053 caaatgccattccttcaaagcaacctttataagtttcaatttctctttcaaaacaaaaccaccccaacctgtgacttccaaatatttccatttttcactt 13418152  T
Q  398 acaaaattcttatacccaggaacatccatccaacatttcagcatccttgatggcctcggaccccaattctcctcatcaacagacaacaacaacgggcaat 497  Q
    |||||||||||||| ||||| || |||  ||||||||||| || ||| || |||||||| |||||||| ||||||||||| | ||||| |||||| || |    
T  13418153 acaaaattcttatatccaggtacttcctgccaacatttcaacaacctagaaggcctcggtccccaattttcctcatcaactgtcaacagcaacggacagt 13418252  T
Q  498 gatcagacagaccacgtaacagagc 522  Q
    ||||||||| ||||||||| |||||    
T  13418253 gatcagacaaaccacgtaaaagagc 13418277  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 515
Target Start/End: Original strand, 6825876 - 6825964
Alignment:
Q  427 ccaacatttcagcatccttgatggcctcggaccccaattctcctcatcaacagacaacaacaacgggcaatgatcagacagaccacgta 515  Q
    ||||||||||||||| || || || |  || |||||||| |||||||| |||||||||  |||||||||||||||||| ||||| ||||    
T  6825876 ccaacatttcagcattctagacggacggggtccccaattttcctcatccacagacaactgcaacgggcaatgatcagagagaccccgta 6825964  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 15676370 - 15676422
Alignment:
Q  449 ggcctcggaccccaattctcctcatcaacagacaacaacaacgggcaatgatc 501  Q
    ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||    
T  15676370 ggcctaggaccccaattctcctcatcaacagacaacaccaaagggcaatgatc 15676422  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 515
Target Start/End: Complemental strand, 17555886 - 17555703
Alignment:
Q  332 ttcaacttctcttttaggacaaaaccaccccatcctgaaacctccaaagaattccacttttcactaacaaaattcttatacccaggaacatccatccaac 431  Q
    ||||| |||||||| || |||||||| |||||||| | |||||  ||||||||||| ||||||| ||||||||  ||||| ||||| |  ||   |||||    
T  17555886 ttcaatttctctttaagaacaaaaccgccccatccggtaacctgaaaagaattccatttttcacgaacaaaatcattataaccaggcatgtcttgccaac 17555787  T
Q  432 atttcagcatccttgatggcctcggaccccaattctcctcatcaacagacaacaacaacgggcaatgatcagacagaccacgta 515  Q
    ||||||| |  |   | |||||||| |||||||| || ||||| || |||||||  | ||| ||||||||||||||||| ||||    
T  17555786 atttcagaagacgcaacggcctcggtccccaattttcttcatctactgacaacacaaccggacaatgatcagacagaccccgta 17555703  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 417
Target Start/End: Original strand, 20826728 - 20826813
Alignment:
Q  332 ttcaacttctcttttaggacaaaaccaccccatcctgaaacctccaaagaattccacttttcactaacaaaattcttatacccagg 417  Q
    ||||| |||||||| || |||||||| |||||||| | |||||  ||||||||||| ||||||| ||||||||  ||||| |||||    
T  20826728 ttcaatttctctttaagaacaaaaccgccccatccggtaacctgaaaagaattccatttttcacgaacaaaatcattataaccagg 20826813  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 29719653 - 29719589
Alignment:
Q  302 tgccactccttcaacgcaaccttcaacaatttcaacttctcttttaggacaaaaccaccccatcc 366  Q
    ||||||||||| ||||| ||||||| ||||||||| || ||||| || |||||||| ||||||||    
T  29719653 tgccactcctttaacgctaccttcatcaatttcaatttttctttgagcacaaaacctccccatcc 29719589  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 502
Target Start/End: Original strand, 21412683 - 21412856
Alignment:
Q  329 aatttcaacttctcttttaggacaaaaccaccccatcctgaaacctccaaagaattccacttttcactaacaaaattcttatacccaggaacatccatcc 428  Q
    ||||||||||| ||||| |  |||||||||||||| ||||  || |  ||||||||||| || ||  | ||||| |  || ||||||||||||||   ||    
T  21412683 aatttcaacttttctttcaaaacaaaaccaccccaacctgtgacattgaaagaattccatttatctgtgacaaactgtttgtacccaggaacatcttgcc 21412782  T
Q  429 aacatttcagcatccttgatggcctcggaccccaattctcctcatcaacagacaacaacaacgggcaatgatca 502  Q
    |||| |||| ||| |  || |  || ||||||||||| ||||||||||| ||||| ||||| ||||||||||||    
T  21412783 aacacttcaacatacgagaggatcttggaccccaattttcctcatcaactgacaaaaacaaggggcaatgatca 21412856  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 501
Target Start/End: Original strand, 5500141 - 5500187
Alignment:
Q  455 ggaccccaattctcctcatcaacagacaacaacaacgggcaatgatc 501  Q
    ||||||||||||||||||| ||||||||||| ||| || ||||||||    
T  5500141 ggaccccaattctcctcatgaacagacaacaccaaaggacaatgatc 5500187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 501
Target Start/End: Complemental strand, 32350921 - 32350875
Alignment:
Q  455 ggaccccaattctcctcatcaacagacaacaacaacgggcaatgatc 501  Q
    |||||||||| |||||||||||||||||||| ||| || ||||||||    
T  32350921 ggaccccaatcctcctcatcaacagacaacaccaaaggacaatgatc 32350875  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 506
Target Start/End: Original strand, 20658460 - 20658517
Alignment:
Q  449 ggcctcggaccccaattctcctcatcaacagacaacaacaacgggcaatgatcagaca 506  Q
    |||||||| ||||||||||||| ||||||||| || | |||||| |||||||| ||||    
T  20658460 ggcctcggcccccaattctccttatcaacagataaaatcaacggacaatgatctgaca 20658517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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