View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_49 (Length: 476)
Name: NF0812_low_49
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 30 - 465
Target Start/End: Original strand, 14163424 - 14163855
Alignment:
| Q |
30 |
atgaacacaatattaacccctcatggagatannnnnnnnnnatataaataaaaatgcaaggcgattagtttaacattttcctattatttcatcctccctt |
129 |
Q |
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| T |
14163424 |
atgaacacaatattaacccctcatggagatatttttttt--atataaataaaaatgcaaggtgattagtttaacattttcctattatttcaccctccctt |
14163521 |
T |
|
| Q |
130 |
aaaatagattccgatctatatgactattattagtattatgcatgtgtaataaggatgcgtatcaaaagtcaaaactataatgtaaaaataataattgcta |
229 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14163522 |
aaaacagattccgatctatatgactattattagtattatgcatgtgtaataaggatgcgtatcaaaagtcaaaactataatgtaaaaataataattgcta |
14163621 |
T |
|
| Q |
230 |
ctacataaactattagtattgggcagaatttgttcctactacttccggcaaaaactaacaagagaagtccttaattaaattaaagagaaataattatgct |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14163622 |
ctacataaactattagtattgggcagaatttgttcctaccacttccggcaaaaactaacaagagaagtccttaattaaattaaagagaaataattatgct |
14163721 |
T |
|
| Q |
330 |
tggttatatatagagagcattagagcaagtacacaagagtaaaggacaattaaggtcctaactatcctatacatagagctttccatgacttcatgatcat |
429 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14163722 |
tggt--tatatagagagcattagagcaagtacacaagagtaaaggacaattaaggtcctaactatcctatacatagagctttccatgacttcatgatcat |
14163819 |
T |
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| Q |
430 |
catattcatatgtacttatataaggagtatgttcat |
465 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
14163820 |
catattcatatgtacttatataaggagtatgttcat |
14163855 |
T |
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