View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_50 (Length: 474)
Name: NF0812_low_50
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 445
Target Start/End: Complemental strand, 25091150 - 25090731
Alignment:
| Q |
20 |
tatgtaaaatgaatttattataaaaaat-gtcattaccttacaagtgataagagaatgcttttcgnnnnnnnnnngtgataagagaatgagttaattgca |
118 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25091150 |
tatgtaaaatgaatttattataaaaaattgtcattaccttacaagtgataagagaatgcttttcgaaaaaaaa--gtgataagagaatgagttaattgca |
25091053 |
T |
|
| Q |
119 |
atataaaaatttaatttaatgtatatgtgagtttaaaacttaaatcgaaaaaagtatagtacaaaatatgttgattttgactctataaaaatccagaaan |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25091052 |
atataaaaatttaatttaatgtatctgtgagtttaaaacttaaatcgaaaaaagtatagtacaaaatatgttgattttgactctataaaaattcagaaaa |
25090953 |
T |
|
| Q |
219 |
nnnnnnaatgttgtttaactaaatttagtgtatgccgacagaagggtatcttgatccgtataaaaaagtattcaatgcatgcacgatcgcgtaatgtggg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25090952 |
aaatttaatgttgtttaactaaatttagtgtatgccgacagaagggtatcttgatccgtataaaagagtattcaatgcatgcacgatcgcgtaatgtggg |
25090853 |
T |
|
| Q |
319 |
cccatgaaagcaccgcaccgtctaatctactctacactgtcaacctatactcatgacatcaaaatcaggaaatttaccatatgcagttaattgtgctgaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25090852 |
cccatgaaagcaccgcaccgtctaatctactctacactatcgacctatact-----catcaaaatcaggaaatttaccatatgcagttaattgtgctgaa |
25090758 |
T |
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| Q |
419 |
tacgaagagcagatctttggtacaata |
445 |
Q |
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||||||||||||||||||||||||||| |
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| T |
25090757 |
tacgaagagcagatctttggtacaata |
25090731 |
T |
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