View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_51 (Length: 469)

Name: NF0812_low_51
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_51
NF0812_low_51
[»] chr8 (5 HSPs)
chr8 (50-391)||(12930707-12931050)
chr8 (60-391)||(12935453-12935786)
chr8 (153-265)||(26504945-26505055)
chr8 (151-263)||(15588948-15589060)
chr8 (68-113)||(26504850-26504895)
[»] chr4 (9 HSPs)
chr4 (50-391)||(14173968-14174312)
chr4 (50-391)||(28611558-28611902)
chr4 (59-391)||(14178722-14179057)
chr4 (59-391)||(28606805-28607140)
chr4 (60-391)||(44161617-44161949)
chr4 (60-391)||(11104500-11104829)
chr4 (59-360)||(48826701-48827000)
chr4 (87-257)||(48708086-48708256)
chr4 (172-329)||(24726288-24726442)
[»] chr1 (1 HSPs)
chr1 (60-391)||(34907170-34907503)
[»] chr7 (7 HSPs)
chr7 (60-391)||(37040426-37040760)
chr7 (50-380)||(15290273-15290604)
chr7 (60-361)||(12099060-12099361)
chr7 (208-381)||(12082055-12082227)
chr7 (217-295)||(2757370-2757448)
chr7 (60-142)||(12084669-12084751)
chr7 (56-120)||(2757209-2757273)
[»] chr5 (5 HSPs)
chr5 (60-391)||(29106878-29107209)
chr5 (59-391)||(42910992-42911323)
chr5 (50-140)||(38994689-38994779)
chr5 (152-242)||(38997230-38997320)
chr5 (52-115)||(38997130-38997193)
[»] chr2 (1 HSPs)
chr2 (59-391)||(8539214-8539549)
[»] chr3 (3 HSPs)
chr3 (277-391)||(51302192-51302306)
chr3 (51-142)||(51302937-51303028)
chr3 (151-187)||(51302308-51302344)
[»] chr6 (2 HSPs)
chr6 (60-242)||(2100199-2100379)
chr6 (235-283)||(2100723-2100771)


Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 50 - 391
Target Start/End: Complemental strand, 12931050 - 12930707
Alignment:
Q  50 tgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||           
T  12931050 tgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaa 12930951  T
Q  150 n--tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattaca 247  Q
       ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12930950 aaatgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattaca 12930851  T
Q  248 atattctctccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagt 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  12930850 atattctctccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagt 12930751  T
Q  348 tatagagatgatacccacccggtgtatttttcccacactctctg 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12930750 tatagagatgatacccacccggtgtatttttcccacactctctg 12930707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 60 - 391
Target Start/End: Complemental strand, 12935786 - 12935453
Alignment:
Q  60 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn--tgaacac 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||          |||||||    
T  12935786 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaagaaactggatcttgcagcgcagcggtagcgataaaaaaatgaacac 12935687  T
Q  158 caatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 257  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935686 caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 12935587  T
Q  258 cactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||    
T  12935586 cactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttttactctaatgctattattttatagcacctagaagttatagagatg 12935487  T
Q  358 atacccacccggtgtatttttcccacactctctg 391  Q
    ||||||||||||||||||||||||||||||||||    
T  12935486 atacccacccggtgtatttttcccacactctctg 12935453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 265
Target Start/End: Original strand, 26504945 - 26505055
Alignment:
Q  153 aacaccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 252  Q
    |||| |||||||||||||| || ||| |||||||   ||| ||| ||||| | ||||||||| |||||||||| |||||| |||| ||||||||||||||    
T  26504945 aacatcaatatttaacgtg-aataccgtctaataacaaggcaaa-accacagtacaaactccaaaaaatattcaactataataaaaaatattacaatatt 26505042  T
Q  253 ctctccactctct 265  Q
    || || |||||||    
T  26505043 ctttcaactctct 26505055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 15589060 - 15588948
Alignment:
Q  151 tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata 250  Q
    |||||| |||||||||   || ||||||||||| || |||| |||| | || | |||||||||  ||||||||| |||| ||| ||| |||||||||| |    
T  15589060 tgaacatcaatatttattttgaaaaaccctctattaatgagagaaaaatcaagtgacaaactctaaaaaatatttcactttatcaaacaatattacaaca 15588961  T
Q  251 ttctctccactct 263  Q
    || ||||||||||    
T  15588960 ttttctccactct 15588948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
Q  68 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 113  Q
    |||||||| |||| | ||||||||||||||||| ||||||||||||    
T  26504850 tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa 26504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 50 - 391
Target Start/End: Complemental strand, 14174312 - 14173968
Alignment:
Q  50 tgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||            
T  14174312 tgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagtgataaaa 14174213  T
Q  150 n---tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattac 246  Q
        ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174212 aaaatgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattac 14174113  T
Q  247 aatattctctccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaag 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14174112 aatattctctccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaag 14174013  T
Q  347 ttatagagatgatacccacccggtgtatttttcccacactctctg 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14174012 ttatagagatgatacccacccggtgtatttttcccacactctctg 14173968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 50 - 391
Target Start/End: Original strand, 28611558 - 28611902
Alignment:
Q  50 tgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||           
T  28611558 tgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaa 28611657  T
Q  150 n---tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattac 246  Q
        ||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611658 aaaatgaacaccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattac 28611757  T
Q  247 aatattctctccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaag 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28611758 aatattctctccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaag 28611857  T
Q  347 ttatagagatgatacccacccggtgtatttttcccacactctctg 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28611858 ttatagagatgatacccacccggtgtatttttcccacactctctg 28611902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 59 - 391
Target Start/End: Complemental strand, 14179057 - 14178722
Alignment:
Q  59 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn---tgaac 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||           |||||    
T  14179057 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcaataaaaaaaatgaac 14178958  T
Q  156 accaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 255  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178957 accaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 14178858  T
Q  256 tccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14178857 tccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagaga 14178758  T
Q  356 tgatacccacccggtgtatttttcccacactctctg 391  Q
    ||||||||||||||||||||||||||||||||||||    
T  14178757 tgatacccacccggtgtatttttcccacactctctg 14178722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 59 - 391
Target Start/End: Original strand, 28606805 - 28607140
Alignment:
Q  59 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn---tgaac 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||           | |||    
T  28606805 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaattaac 28606904  T
Q  156 accaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 255  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606905 accaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 28607004  T
Q  256 tccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28607005 tccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagaga 28607104  T
Q  356 tgatacccacccggtgtatttttcccacactctctg 391  Q
    ||||||||||||||||||||||||||||||||||||    
T  28607105 tgatacccacccggtgtatttttcccacactctctg 28607140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 60 - 391
Target Start/End: Complemental strand, 44161949 - 44161617
Alignment:
Q  60 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn---tgaaca 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||           ||||||    
T  44161949 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgataaaaaaaatgaaca 44161850  T
Q  157 ccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 256  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  44161849 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat--tctct 44161752  T
Q  257 ccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 356  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44161751 ccactctcttacacacacaagagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagcacctagaagttatagagat 44161652  T
Q  357 gatacccacccggtgtatttttcccacactctctg 391  Q
    |||||||||||||||||||||||||||||||||||    
T  44161651 gatacccacccggtgtatttttcccacactctctg 44161617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 60 - 391
Target Start/End: Complemental strand, 11104829 - 11104500
Alignment:
Q  60 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnntgaacacca 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||        |||||||||    
T  11104829 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagctgtagcgataaaaatgaacacca 11104730  T
Q  160 atatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 259  Q
    ||||||||| | ||||| |||||||||  ||||| || ||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||    
T  11104729 atatttaacatagaaaatcctctaatatcgagggtaa-accacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctcca 11104631  T
Q  260 ctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgat 359  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  11104630 ctctcttacacaca-aagagatacaatatagtgtttcccgtgagacccactcctattcaaatgctattattttataacacctagaagttatagagatgat 11104532  T
Q  360 acccacccggtgtatttttcccacactctctg 391  Q
    | ||||||||||||||||||| ||||||||||    
T  11104531 atccacccggtgtatttttcctacactctctg 11104500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 59 - 360
Target Start/End: Original strand, 48826701 - 48827000
Alignment:
Q  59 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnnt-gaacac 157  Q
    |||||||| |||||||||||||||||| |||||||||||||| |||||| |||  |||||||||||||||||| ||||||||||          ||||||    
T  48826701 ttgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaa--gagattggatcttgcagcgcagcggtagcgatagaaaaagaacac 48826798  T
Q  158 caatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 257  Q
    ||||||||||||||||||| |||||||||| |||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  48826799 caatatttaacgtggaaaatcctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatattctctt 48826897  T
Q  258 cactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 357  Q
    | |||||| ||||||||||||||||||||||||||||||||||||||   ||| |||||  ||||||||||| |||||||||||||||||||||||||||    
T  48826898 cgctctcttacacacacaagagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagcacctagaagttatagagatg 48826997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 257
Target Start/End: Original strand, 48708086 - 48708256
Alignment:
Q  87 tgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnntgaacaccaatatttaacgtggaaaaccctctaata 186  Q
    |||||||||||||||||||||  |||||| |||| ||||| || | ||| ||| ||        | || ||||||||||||| || ||||| || |||||    
T  48708086 tgtaaattaaaattccaaaatataaaagaaattgaatcttacaacgcagtggtggcgataaaattaaataccaatatttaacatgaaaaactctataata 48708185  T
Q  187 ctgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 257  Q
    || || |||| |||||| |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  48708186 ctaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 48708256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 172 - 329
Target Start/End: Original strand, 24726288 - 24726442
Alignment:
Q  172 gaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctcacaca 271  Q
    ||||||| |||||||   |||||||  ||||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| ||||| ||  |    
T  24726288 gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctcttaccga 24726387  T
Q  272 cacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattat 329  Q
    |||  |||||||| |||| ||||| |||||||||| ||| |||||| |||| ||||||    
T  24726388 cac--gagatacactatattgttttccgtgagacc-actcctattcaaatgttattat 24726442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 60 - 391
Target Start/End: Complemental strand, 34907503 - 34907170
Alignment:
Q  60 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn--tgaacac 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||          |||||||    
T  34907503 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacac 34907404  T
Q  158 caatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 257  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907403 caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 34907304  T
Q  258 cactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  34907303 cactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagagatg 34907204  T
Q  358 atacccacccggtgtatttttcccacactctctg 391  Q
    ||||||||||||||||||||||||||||||||||    
T  34907203 atacccacccggtgtatttttcccacactctctg 34907170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 60 - 391
Target Start/End: Original strand, 37040426 - 37040760
Alignment:
Q  60 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn---tgaaca 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||           ||||||    
T  37040426 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaaagactggatcttgcagcgcagcggtagcgataaaaaaaatgaaca 37040525  T
Q  157 ccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 256  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37040526 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattttct 37040625  T
Q  257 ccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 356  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37040626 ccactctctcacacacacaagagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagat 37040725  T
Q  357 gatacccacccggtgtatttttcccacactctctg 391  Q
    |||||||||||| ||||||||||||||||||||||    
T  37040726 gatacccacccgatgtatttttcccacactctctg 37040760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 50 - 380
Target Start/End: Complemental strand, 15290604 - 15290273
Alignment:
Q  50 tgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa-gagattggatcttgcagcacagcggtagcnnnnnn 148  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| ||||  ||||          
T  15290604 tgataccacttgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaaagagattggatcttgcagcgcagccttagcgataaa 15290505  T
Q  149 nn---tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatatta 245  Q
         ||||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||||||| ||| || |||||||||||| ||||||||||    
T  15290504 aaaaatgaacaccaatatttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaatatta 15290405  T
Q  246 caatattctctccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaa 345  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||||| ||||||||  ||||  |||||||||||    
T  15290404 caatattctctccactctcttacacacacaagagatacaatatagtgttt-ccgtgagacccactcctattcgaatgctat--tatttcagcacctagaa 15290308  T
Q  346 gttatagagatgatacccacccggtgtatttttcc 380  Q
    |||||||||||||||||||||||||||||||||||    
T  15290307 gttatagagatgatacccacccggtgtatttttcc 15290273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 60 - 361
Target Start/End: Complemental strand, 12099361 - 12099060
Alignment:
Q  60 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnntgaacacca 159  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| || || ||||        |||| | ||    
T  12099361 tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaagagatatgatcttgcagctcaccgatagcgataaaaatgaaaagca 12099262  T
Q  160 atatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 259  Q
    |||||| ||||| |||||||||||||   || ||||| |||| ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  12099261 atattttacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctcca 12099162  T
Q  260 ctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgat 359  Q
    |||||| |||| ||||||||| ||||||| |||||||  |||||||  ||| |||||| |||| |||||| ||||| |||||| ||||||||||||||||    
T  12099161 ctctcttacacgcacaagagacacaatattgtgtttctagtgagactcactcctattcaaatgatattattttataacacctaaaagttatagagatgat 12099062  T
Q  360 ac 361  Q
    ||    
T  12099061 ac 12099060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 208 - 381
Target Start/End: Complemental strand, 12082227 - 12082055
Alignment:
Q  208 aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctcacacacacaagagatacaatatagtgtttcccgtgagacct 307  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||  | ||||||||||||||||||||||   ||||||      
T  12082227 aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctcttacacggaaaagagatacaatatagtgtttctaatgagactc 12082129  T
Q  308 acttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttttccc 381  Q
     || |||||| |||| |||||| ||||||| |||||||||||||||||| ||||| ||||| | ||||||||||    
T  12082128 gctcctattcaaatgttattattttatagcgcctagaagttatagagataatacctacccgatatatttttccc 12082055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 2757370 - 2757448
Alignment:
Q  217 aaaatattccactatattaaagaatattacaatattctctccactctctcacacacacaagagatacaatatagtgttt 295  Q
    |||||||||||||||||| || |||||| || |||||||||||||||||  ||||| ||||||||||||||||||||||    
T  2757370 aaaatattccactatatttaaaaatattgcactattctctccactctctttcacactcaagagatacaatatagtgttt 2757448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 12084751 - 12084669
Alignment:
Q  60 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagc 142  Q
    |||||||||| ||||||||||| | || ||||||||||||| |||||||||| ||| ||||||||||| ||| || |||||||    
T  12084751 tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaatagacattggatcttgtagcgcaacggtagc 12084669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 2757209 - 2757273
Alignment:
Q  56 cacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattg 120  Q
    ||||||||| | || |||||||||   ||||||||||||||||||||||||| ||||||| ||||    
T  2757209 cacttgttgtgttcaacgagcttattacaagtgtaaattaaaattccaaaattcaaaagaaattg 2757273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 60 - 391
Target Start/End: Original strand, 29106878 - 29107209
Alignment:
Q  60 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnntgaacacca 159  Q
    ||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||        |||||||||    
T  29106878 tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaaaagattggatcttgcagcgcagcggtagcgttaaaaatgaacacca 29106977  T
Q  160 atatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 259  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29106978 atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 29107077  T
Q  260 ctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgat 359  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||    
T  29107078 ctctcttacacacacaagagatacaa-atagtgtttcccgtgagacctacttctattctaatgctattattttttagcacctagaagttataaagatgat 29107176  T
Q  360 a-cccacccggtgtatttttcccacactctctg 391  Q
    | |||||||  ||||||||||||||||||||||    
T  29107177 accccacccaatgtatttttcccacactctctg 29107209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 59 - 391
Target Start/End: Original strand, 42910992 - 42911323
Alignment:
Q  59 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnntgaacacc 158  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| ||||||||||| |||||| | |        ||||||||    
T  42910992 ttgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaagagattagatcttgcagcgcagcggcaacgataaaaatgaacacc 42911091  T
Q  159 aatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcc 258  Q
    |||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  42911092 aatatttaacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaa-tattccactatatttaagaatattacaatattctctcc 42911190  T
Q  259 actctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatga 358  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  42911191 actctctcacacacacaaaagatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagcaccaagaagttatagagatga 42911290  T
Q  359 tacccacccggtgtatttttcccacactctctg 391  Q
    ||||||||| |||||||||| ||||||||||||    
T  42911291 tacccacccagtgtattttttccacactctctg 42911323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 38994689 - 38994779
Alignment:
Q  50 tgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggta 140  Q
    ||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||| |||||  | ||||||||||||||  ||||||||    
T  38994689 tgataccacttgttgggcttgacgatcttaatgctagtgtaaattaaaattccaaaacccaaacaaaattggatcttgcagtgcagcggta 38994779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 38997230 - 38997320
Alignment:
Q  152 gaacaccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaata 242  Q
    ||||| |||||||| |||| |||||||||||||||  ||  |||| || |||||||||||||| ||||||| |||| ||||||||||||||    
T  38997230 gaacagcaatattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata 38997320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 38997130 - 38997193
Alignment:
Q  52 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 115  Q
    |||| |||||||||| |||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  38997130 atactacttgttgggttcgaagggcttaatgcgggtgtaaattaaaattccagaatccaaaaga 38997193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 59 - 391
Target Start/End: Complemental strand, 8539549 - 8539214
Alignment:
Q  59 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn-tgaacac 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| |         ||||||     
T  8539549 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaagagattggatcttgcagcgcagcggtaacaataaaaaatgaacat 8539450  T
Q  158 caatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 257  Q
    |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  8539449 caatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctc 8539350  T
Q  258 cactctctcacacacacaagagatacaa---tatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag 354  Q
    |||||||| |||||||||||||||||||   |||||||||| |||||||||| ||| |||||| | ||||||||| ||| |||||||| |||||||||||    
T  8539349 cactctcttacacacacaagagatacaatattatagtgttt-ccgtgagacccactcctattcgattgctattattttacagcacctaaaagttatagag 8539251  T
Q  355 atgatacccacccggtgtatttttcccacactctctg 391  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  8539250 atgatacccatccgatgtatttttcccacactctctg 8539214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 277 - 391
Target Start/End: Complemental strand, 51302306 - 51302192
Alignment:
Q  277 gagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtattt 376  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||    
T  51302306 gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatgattcccacccggtgtattt 51302207  T
Q  377 ttcccacactctctg 391  Q
    |  ||||||||||||    
T  51302206 tatccacactctctg 51302192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 51303028 - 51302937
Alignment:
Q  51 gataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagc 142  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  51303028 gataccacttgttgggatcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaacagattggatcttgcagcgcagcggtagc 51302937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 51302344 - 51302308
Alignment:
Q  151 tgaacaccaatatttaacgtggaaaaccctctaatac 187  Q
    |||||||||||||||||||||||||||||||||||||    
T  51302344 tgaacaccaatatttaacgtggaaaaccctctaatac 51302308  T

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Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 60 - 242
Target Start/End: Original strand, 2100199 - 2100379
Alignment:
Q  60 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattgga-tcttgcagcacagcggtagcnnnnnnnntgaacacc 158  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| || | |||||||||| || ||          |||||| |    
T  2100199 tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaattcataagagatttgaattttgcagcacaacgataatgataaaattgaacatc 2100298  T
Q  159 aatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaata 242  Q
    ||||||||| |||||||||||| ||||| |||| |||| ||   ||| ||||||||||||||||||||||||||||||||||||    
T  2100299 aatatttaaggtggaaaaccctttaataatgagcgaaaaac---ggggcaaactccgaaaaatattccactatattaaagaata 2100379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 2100723 - 2100771
Alignment:
Q  235 aaagaatattacaatattctctccactctctcacacacacaagagatac 283  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  2100723 aaagaatattacaatattctctccactctcttacatacacaagagatac 2100771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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