View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_53 (Length: 454)
Name: NF0812_low_53
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 23671714 - 23671426
Alignment:
| Q |
11 |
cacagacaacacagaagaaacagagaagtctgacacaaannnnnnnaaataaaataattcaatgtaatcacatgtggttctatatcataatatgcnnnnn |
110 |
Q |
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| T |
23671714 |
cacagacaacacagaagaaacaaagaagtctgacacaaatatttttaaataaaataattcaatgtaatcacatgtggtgctatatcataatatgcaaaaa |
23671615 |
T |
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| Q |
111 |
nntatcctcaattttttattccaactttattctgaagtgnnnnnnnnattaaaaaattaaaatataaaaccaatttcattaaacaaagacaaatatatgt |
210 |
Q |
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| T |
23671614 |
aatatcctcaattttttattccaactttattcttaagtgttttttttattaaaaaattaaa-tataaaaccaatttcattaaacaaagacaaatatatgt |
23671516 |
T |
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| Q |
211 |
tcaatttaatctaaatttaaaataattattacatgaaatctaattcacttaaactaatataaatcataatcatgattttctcataatcat |
300 |
Q |
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| T |
23671515 |
tcaatttaatctaaatttaaaataattattacatgaaatctaattcacttaaactaatataaatcataatcatgattttctcataatcat |
23671426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 23671356 - 23671300
Alignment:
| Q |
370 |
gatttacaatggacaaaaagaattgctatcggtcttacccactccgagctcagaggt |
426 |
Q |
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| T |
23671356 |
gatttacaatggacaaaaagaattgctatcggtcttacccaatccgagctcagaggt |
23671300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 23613017 - 23612946
Alignment:
| Q |
171 |
aatataaaaccaatttcattaaacaaagacaaatatatgttcaattt-aatctaaatttaaaataattatta |
241 |
Q |
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| T |
23613017 |
aatataaaacctatttcatccaacaaaatccaagatatgttcaatttaaatctaaatttaaaatcattatta |
23612946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 86
Target Start/End: Complemental strand, 23613216 - 23613187
Alignment:
| Q |
57 |
aaataaaataattcaatgtaatcacatgtg |
86 |
Q |
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| T |
23613216 |
aaataaaataattcaatgtaatcacatgtg |
23613187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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