View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0812_low_54 (Length: 448)
Name: NF0812_low_54
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_54 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 29 - 438
Target Start/End: Original strand, 4584805 - 4585217
Alignment:
| Q |
29 |
ataccatttatgattttaaatcacagtccgcagccataatgcagacgtagtataacatattttgagatctttgcaacgtcattgcagcagttatcttgac |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4584805 |
ataccacttatgattttaaatcacagtccgcagccataatgcagacgtagtataacatattttgagatctttgcaacgtcattgcagcagttatcttgac |
4584904 |
T |
|
| Q |
129 |
tgtatcatccacagtttgccgtaatataaaggttggcaatgtaaccgcgtcagtaaattaaaagcatgataccactaaaaatggaactaaaatgaaaatc |
228 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4584905 |
tgtatcgtccacagtttgccgtaatataaaggttggcaatgtaaccgcgtcagtaaattaaaagcatgataccagtaaaaatggaactaaaatgaaaatc |
4585004 |
T |
|
| Q |
229 |
tgaaagcttgat-atccctaatactgaaaatagtat-aaatacaatgaaaagattgcataact-aaacaactctatgaaaatctatgccaaatctaccaa |
325 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
4585005 |
tgaaagcttgataatccctaatactgaaaacggtataaaatacaatgaaaagattgcataactaaaacaactctatgaaaatttatgccaaatctaccac |
4585104 |
T |
|
| Q |
326 |
aataaattctctagtttagaaaacaatctatttgaaaattacagaaattttagaaataaaataaaattgatgaagggctcagtagtacttacccaacaga |
425 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||| | || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4585105 |
aacaaattctctagtttagtgaacaatctatttgaataataaagacattttagaaataaaataaaattgatgaagggctcagtagtacttacccaacaga |
4585204 |
T |
|
| Q |
426 |
aaaccaacctttg |
438 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
4585205 |
acaccaacctttg |
4585217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5435 times since January 2019
Visitors: 5757