View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_56 (Length: 447)
Name: NF0812_low_56
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 34953087 - 34953288
Alignment:
| Q |
16 |
atacaacattattgtgcctacaattttaatttcnnnnnnnnnngttaatgaataatggaatgaactgaaatctaacctgataacttcaacaacaatattc |
115 |
Q |
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| T |
34953087 |
atacaacattattgtgcctacaattttaattttttttttttttgttaatgaataatggaatgaactgaaatctaacctgataacttcaacaacaatattc |
34953186 |
T |
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| Q |
116 |
aaaacgttgaaattaagaggatcttccttcaattttttcctctcagttatgcacactagaatgatgaatatgactaaataggagacttgagaaaatatca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34953187 |
aaaacgttgaaattaagaggatcttccttcaattttttcctctcagttatgcatactagaatgatgaatatgactaaataggagagttgagaaaatatca |
34953286 |
T |
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| Q |
216 |
aa |
217 |
Q |
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|| |
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| T |
34953287 |
aa |
34953288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 59 - 217
Target Start/End: Original strand, 34971839 - 34971997
Alignment:
| Q |
59 |
gttaatgaataatggaatgaactgaaatctaacctgataacttcaacaacaatattcaaaacgttgaaattaagaggatcttccttcaattttttcctct |
158 |
Q |
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|||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34971839 |
gttaatgaataatggaattaacagaaatctaaccttacaacttcaacaacaatattcaaaacgttgaaattgagaggatcttccttcaattttttcctct |
34971938 |
T |
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| Q |
159 |
cagttatgcacactagaatgatgaatatgactaaataggagacttgagaaaatatcaaa |
217 |
Q |
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| T |
34971939 |
cagttatgcacactagaatgatgaatatgactaaataggagagttgagaaaatatcaaa |
34971997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 275 - 398
Target Start/End: Original strand, 34953346 - 34953469
Alignment:
| Q |
275 |
ccatcatatttcaatgggaggaatgaggtgtaaggaggaaggtacctaaccacgagtacaaattaaagcaagtaaatatcaatggttatttatttttatt |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34953346 |
ccatcatatttcaatgggaggaatgaggtgtaaggaggaaggtacctaaccacgagtacaaattaaagcaagtaaatatcaatggttatttatttttatt |
34953445 |
T |
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| Q |
375 |
gatgaacaatcttagtacactttt |
398 |
Q |
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|||||||||||||||||||||||| |
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| T |
34953446 |
gatgaacaatcttagtacactttt |
34953469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 35032698 - 35032810
Alignment:
| Q |
83 |
aaatctaacctgataacttcaacaacaatattcaaaacgttgaaattaagaggatcttccttcaattttttcctctcagttatgcacactagaatgatga |
182 |
Q |
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||||||||||||| |||||||||| ||||||| || || |||||||| || ||||| |||||||||| |||||||||||||||||| ||||| ||||||| |
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| T |
35032698 |
aaatctaacctgacaacttcaacagcaatattgaagacattgaaattgagtggatcgtccttcaattgtttcctctcagttatgcaaactagtatgatga |
35032797 |
T |
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| Q |
183 |
atatgactaaata |
195 |
Q |
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| T |
35032798 |
aaatgactaaata |
35032810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 321
Target Start/End: Original strand, 34972063 - 34972101
Alignment:
| Q |
283 |
tttcaatgggaggaatgaggtgtaaggaggaaggtacct |
321 |
Q |
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| T |
34972063 |
tttcaatgggaggaatgaggtgtaaggaggaaggtacct |
34972101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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