View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_57 (Length: 444)

Name: NF0812_low_57
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_57
NF0812_low_57
[»] chr5 (4 HSPs)
chr5 (29-354)||(7894975-7895323)
chr5 (136-321)||(7976596-7976780)
chr5 (40-95)||(28091062-28091117)
chr5 (29-67)||(7976860-7976898)
[»] chr3 (6 HSPs)
chr3 (143-274)||(20977479-20977610)
chr3 (143-197)||(2996394-2996448)
chr3 (45-113)||(25596902-25596970)
chr3 (233-274)||(20949585-20949626)
chr3 (236-274)||(20948897-20948935)
chr3 (152-197)||(45856794-45856839)
[»] chr7 (2 HSPs)
chr7 (36-115)||(44501459-44501538)
chr7 (45-113)||(32413624-32413692)
[»] chr4 (1 HSPs)
chr4 (60-100)||(29676497-29676537)
[»] chr6 (1 HSPs)
chr6 (80-112)||(33844301-33844333)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 29 - 354
Target Start/End: Original strand, 7894975 - 7895323
Alignment:
Q  29 acccgaatgcattatccttcacattctttcatttttgaatgccaaacaagtcgttcaaacttgcattttgtctaccagatggaag--------gaaactt 120  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||        |||||||    
T  7894975 acccgaatgcattatccttcacattctttcctttttgaatgccaaacaagccgttcaa-cttgcattttgtctatcagatggaagaatctctggaaactt 7895073  T
Q  121 cttcccactcttagattcg----------------attttacacgaaattcacaaaatttgtgtctaaggttttatctcttcgcaattcctctgtcaaac 204  Q
    || ||| ||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7895074 ctacccgctcttagattcgattctacagattttcgattttacacgaaattcacaaaatttgtgtctaaggttttatctcttcgcaattcctctgtcaaac 7895173  T
Q  205 tgcaggctcttgaatttaatagcaatgctggtcgcttagagcctcacttactcaaaaggattgtgaattatactatttcaatcaatgtccaattattagg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||  ||||||||||||||||||    
T  7895174 tgcaggctcttgaatttaatagcaatgctggtcgcttagagcctcacttactcaaaagaattgtgaattatgctatttcacacaatgtccaattattagg 7895273  T
Q  305 actttgttcctatactgaaattggacacattttaccaagcatgttttcat 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7895274 actttgttcctatactgaaattggacacattttaccaagcatgttttcat 7895323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 136 - 321
Target Start/End: Complemental strand, 7976780 - 7976596
Alignment:
Q  136 ttcgattttacacgaaattcacaaaatttgtgtctaaggttttatctcttcgcaattcctctgtcaaactgcaggctcttgaatttaatagcaatgctgg 235  Q
    ||||| |||||| ||| ||||| ||||| ||||||| ||||| || |||||||||||||||| ||| |||||||||||| ||||||||  || |    ||    
T  7976780 ttcgactttacaagaatttcaccaaattcgtgtctagggttt-atgtcttcgcaattcctctatcacactgcaggctctcgaatttaagcgcgaacgggg 7976682  T
Q  236 tcgcttagagcctcacttactcaaaaggattgtgaattatactatttcaatcaatgtccaattattaggactttgttcctatactg 321  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||    ||||||||||| | ||||||||    
T  7976681 tcgcttagagcctcacttactcaaaaggattgtgaattatgctatttcacacaatgtccagcggttaggactttggttctatactg 7976596  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 28091062 - 28091117
Alignment:
Q  40 ttatccttcacattctttcatttttgaatgccaaacaagtcgttcaaacttgcatt 95  Q
    |||||||||| ||||| || ||||||  ||||||||||| ||||||||||||||||    
T  28091062 ttatccttcaaattctctcctttttgtttgccaaacaagccgttcaaacttgcatt 28091117  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 7976898 - 7976860
Alignment:
Q  29 acccgaatgcattatccttcacattctttcatttttgaa 67  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  7976898 acccgaatgcattatccttcacattctctcctttttgaa 7976860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 20977479 - 20977610
Alignment:
Q  143 ttacacgaaattcacaaaatttgtgtctaaggttttatctcttcgcaattcctctgtcaaactgcaggctcttgaatttaatagcaatgctggtcgctta 242  Q
    ||||| || |||||| ||||| ||||||||| |||||||||||||| |||||||  ||| | |  |||||||||| |||||  || ||  ||||| ||||    
T  20977479 ttacaagatattcaccaaattcgtgtctaagattttatctcttcgcgattcctccatcacattagaggctcttgattttaagcgccatattggtccctta 20977578  T
Q  243 gagcctcacttactcaaaaggattgtgaatta 274  Q
    ||||||||| ||||  ||||||||||||||||    
T  20977579 gagcctcacatacttgaaaggattgtgaatta 20977610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 2996448 - 2996394
Alignment:
Q  143 ttacacgaaattcacaaaatttgtgtctaaggttttatctcttcgcaattcctct 197  Q
    ||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||    
T  2996448 ttacaagaaattcaccaaatttgtgtctaaggttttatctctttgcgattcctct 2996394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 25596902 - 25596970
Alignment:
Q  45 cttcacattctttcatttttgaatgccaaacaagtcgttcaaacttgcattttgtctaccagatggaag 113  Q
    ||||||||| | |||||||||||| ||||  | | |||||||||||||||||||||||| |||||||||    
T  25596902 cttcacattttgtcatttttgaataccaagtatgccgttcaaacttgcattttgtctacgagatggaag 25596970  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 20949585 - 20949626
Alignment:
Q  233 tggtcgcttagagcctcacttactcaaaaggattgtgaatta 274  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  20949585 tggtcgtttagagcctcacatactcaaaaggattgtgaatta 20949626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 20948897 - 20948935
Alignment:
Q  236 tcgcttagagcctcacttactcaaaaggattgtgaatta 274  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  20948897 tcgcttagagcctcacatacttaaaaggattgtgaatta 20948935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 45856839 - 45856794
Alignment:
Q  152 attcacaaaatttgtgtctaaggttttatctcttcgcaattcctct 197  Q
    |||||| || ||||||||||||||||||||||||||  ||||||||    
T  45856839 attcaccaactttgtgtctaaggttttatctcttcgtgattcctct 45856794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 44501538 - 44501459
Alignment:
Q  36 tgcattatccttcacattctttcatttttgaatgccaaacaagtcgttcaaacttgcattttgtctaccagatggaagga 115  Q
    ||||||||||||||||| || || ||||||||||||||| | |  ||||| ||||||||||||||  |||||||||||||    
T  44501538 tgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaagga 44501459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 32413624 - 32413692
Alignment:
Q  45 cttcacattctttcatttttgaatgccaaacaagtcgttcaaacttgcattttgtctaccagatggaag 113  Q
    |||||||| || || | ||||||  ||||||| | ||||||||||||||||||||| || |||||||||    
T  32413624 cttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaag 32413692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 29676497 - 29676537
Alignment:
Q  60 tttttgaatgccaaacaagtcgttcaaacttgcattttgtc 100  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  29676497 tttttgaatgccaaacacgtcgttcaaacttgcattttgtc 29676537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 33844333 - 33844301
Alignment:
Q  80 cgttcaaacttgcattttgtctaccagatggaa 112  Q
    ||||||||||||||||||||| |||||||||||    
T  33844333 cgttcaaacttgcattttgtccaccagatggaa 33844301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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