View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_60 (Length: 443)
Name: NF0812_low_60
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 78 - 435
Target Start/End: Complemental strand, 6831963 - 6831606
Alignment:
| Q |
78 |
ttattatttgaacatgcactgtttcctagcataccaaataatattaatggtgaagatgattgctgccaatgttatatctcggagctgagtgctagaagta |
177 |
Q |
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| T |
6831963 |
ttattatttgaacatgcactggttcctagcataccaaataatattaatggtgaagatgattgctgccaatgttatatctcggagctgagtgctagaagta |
6831864 |
T |
|
| Q |
178 |
gataaattaccacaaatgagtgatgagattccagttccagtccgtagtctcttggcgtgacactccaataaaatgtgaggagatccctcataaccgtgac |
277 |
Q |
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| T |
6831863 |
gataaattaccacaaatgagtgatgagattccagttccagtccatagtctcttggcgtgacactccaataaaatgtgaggagatccctcataaccgtgac |
6831764 |
T |
|
| Q |
278 |
tacataggcaagtacatagaaaccaaaatatattctctagaatgtaagtgctcatcagtaggacacctgtcatgaagaaagcatcgaaatacaaaagact |
377 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6831763 |
tacaaaggcaagtacatagaaaccaaaatatattccctagaatgtaagtgctcatcagtaggacacctgtcatgaaggaagcatcgaaatacaaaagact |
6831664 |
T |
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| Q |
378 |
tagaaggaggataaactttttccaaataatcttgccccataaaatagcaacagctagg |
435 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
6831663 |
tagaaggaggataaactttttccaaataatcttgccccataaaatagtaacagttagg |
6831606 |
T |
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