View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_68 (Length: 403)
Name: NF0812_low_68
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 30838736 - 30838356
Alignment:
| Q |
10 |
tctatgacccttcaacttgtcctttcatagatccacagttcaattgtcagaaacatggtcgcaaagataagctttaccagaaatataggtggatgccatt |
109 |
Q |
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| T |
30838736 |
tctatgacccttcaacttgtcctttcatagatccacagttcaattgtcagaaacatggtcgcaaagataagctttaccagaaatataggtggatgccatt |
30838637 |
T |
|
| Q |
110 |
ttcttgtaacatgccaaggtacaatttttgttaccattttgtgttcttttattggtttctatggttgtagctaaatgtggttgtgataaattgttttgca |
209 |
Q |
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| T |
30838636 |
ttcttgtaacatgccaaggtacaatttttgttaccattttgtgttcttttattggtttctatggttgtagctaaatgtggttgtgataaattgttttgca |
30838537 |
T |
|
| Q |
210 |
ggttcaatggtttgaactttctgaaaggaaataaaggaaaaaagattatgtttgttggtgactctttgagcttaaatcagttcaattcattggcttgtat |
309 |
Q |
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| T |
30838536 |
ggttcaatggtttgaactttctgaaaggaaataaaggaaaaaagattatgtttgttggtgactctttgagcttaaatcagttcaattcattggcttgtat |
30838437 |
T |
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| Q |
310 |
gattcatgctgctgtaccaaattctagaagcacattcagacaaagagatgctatctcttcagtcacatttgaggttggttc |
390 |
Q |
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| T |
30838436 |
gattcatgctgctgtaccaaattctagaagcacattcagacaaagagatgctatctcttcagtcacatttgaggttggttc |
30838356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 39308450 - 39308386
Alignment:
| Q |
251 |
aagattatgtttgttggtgactctttgagcttaaatcagttcaattcattggcttgtatgattca |
315 |
Q |
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| T |
39308450 |
aagattatgtttgttggtgattctttgagcttaaatcagttcaattcattggcatgtatgattca |
39308386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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