View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_71 (Length: 401)

Name: NF0812_low_71
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_71
NF0812_low_71
[»] chr2 (5 HSPs)
chr2 (132-387)||(21844695-21844951)
chr2 (132-387)||(21843068-21843325)
chr2 (28-129)||(21844985-21845086)
chr2 (272-340)||(32619576-32619644)
chr2 (320-370)||(18236385-18236435)
[»] chr7 (4 HSPs)
chr7 (28-94)||(4500470-4500536)
chr7 (282-387)||(29544463-29544568)
chr7 (316-379)||(22067880-22067943)
chr7 (29-87)||(8837478-8837536)
[»] chr1 (4 HSPs)
chr1 (272-379)||(34381642-34381749)
chr1 (282-351)||(25373730-25373799)
chr1 (134-262)||(14136483-14136611)
chr1 (38-73)||(13119849-13119884)
[»] chr5 (3 HSPs)
chr5 (272-385)||(22967910-22968023)
chr5 (320-387)||(17382101-17382168)
chr5 (320-387)||(24517336-24517403)
[»] chr3 (2 HSPs)
chr3 (272-387)||(8402616-8402731)
chr3 (281-387)||(21829198-21829304)
[»] chr6 (2 HSPs)
chr6 (320-378)||(14924492-14924550)
chr6 (320-384)||(32930541-32930605)
[»] chr8 (2 HSPs)
chr8 (272-370)||(16052360-16052458)
chr8 (278-376)||(31436419-31436517)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 132 - 387
Target Start/End: Complemental strand, 21844951 - 21844695
Alignment:
Q  132 ttggttcaagaggatagtgacaccgatgaagactcccctggtctagaggtaatgaggttgtttgtgagatgatacaacctctatgttcaataaattggtt 231  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  21844951 ttggttcaagaggatagtgacaccgatgaagactcccctagtctagaggtaatggggttgtttgtgagatgatacaacctctatgttcaataaaatggtt 21844852  T
Q  232 tgaaacataatgaataaaatttgattaacttaggaa-gcttatgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttga 330  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  21844851 tgaaacataatgactaaaatttgattaacttaggaaggcttatgacagagcatcatatgatattttaggtaaaaattttattagatttctttgcatttga 21844752  T
Q  331 agacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtatt 387  Q
    |||||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||    
T  21844751 agacaaataagttgtaatttagaggagttgtcaatggttttaggaacatgttatatt 21844695  T

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Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 132 - 387
Target Start/End: Complemental strand, 21843325 - 21843068
Alignment:
Q  132 ttggttcaagaggatagtgacaccgatgaagactcccctggtctagaggtaatgaggttgtttgtgagatgatacaacctctatgttcaataaattggtt 231  Q
    |||||||||||||||||| | |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  21843325 ttggttcaagaggatagttataccgatgaagactcccctagtctagaggtaatggggttgtttgtgagatgatacaacctctatgttcaataaaatggtt 21843226  T
Q  232 tgaaacataatgaataaaatttgattaacttaggaag-cttatgacag-agtatcatatgatattttaggtaaaatttttattagatttatttgcatttg 329  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||| |||||||||||||| ||||||||||    
T  21843225 tgaaacataatcactaaaatttgattaacttaggaagacttatgaaagaagcatcatatgatattttaggtaaattttttattagatttctttgcatttg 21843126  T
Q  330 aagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtatt 387  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  21843125 aagacaaataagttgtaatttagaggagttgccaatggttttaggaacatgttgtatt 21843068  T

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Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 21845086 - 21844985
Alignment:
Q  28 catcaccatcttatttggaaagctcaaggaacatgagcatgaaatcgcaaggttgaaagttggtgaggatatatagtcaagaagaatgagaagaagtaca 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21845086 catcaccatcttatttggaaagctcaaggaacatgagcatgaaatcgcaaggttgaaagttagtgaggatatatagtcaagaagaatgagaagaagtaca 21844987  T
Q  128 tt 129  Q
    ||    
T  21844986 tt 21844985  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 32619576 - 32619644
Alignment:
Q  272 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataa 340  Q
    |||||||| |||||||||||||||| ||  | ||||||| ||  ||| |||||||||||||||||||||    
T  32619576 atgacagaatatcatatgatatttttggctatatttttagtacttttctttgcatttgaagacaaataa 32619644  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 18236435 - 18236385
Alignment:
Q  320 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttt 370  Q
    ||||||||||||| |||| ||||||||||||| || ||||| |||||||||    
T  18236435 tttgcatttgaaggcaaagaaattgtaatttatagaagttgtcaatggttt 18236385  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 4500470 - 4500536
Alignment:
Q  28 catcaccatcttatttggaaagctcaaggaacatgagcatgaaatcgcaaggttgaaagttggtgag 94  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||    
T  4500470 catcaccgtcttatttggaaagctcaaggaacatgagcatgaaatgacaaggttgaaagttagtgag 4500536  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 387
Target Start/End: Original strand, 29544463 - 29544568
Alignment:
Q  282 atcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgt 381  Q
    ||||||||||||||| ||  |  |||||||||  ||| |||||||||||||||||||||  ||  | ||| |||||||| |||| |||| |||||||| |    
T  29544463 atcatatgatatttttggctatgtttttattaattttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaacatat 29544562  T
Q  382 tgtatt 387  Q
    ||||||    
T  29544563 tgtatt 29544568  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 22067943 - 22067880
Alignment:
Q  316 tttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacat 379  Q
    |||||||||||||||||||||||||  ||  | ||| |||||||| ||||||||| ||||||||    
T  22067943 tttatttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaacat 22067880  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 8837478 - 8837536
Alignment:
Q  29 atcaccatcttatttggaaagctcaaggaacatgagcatgaaatcgcaaggttgaaagt 87  Q
    ||||||| ||||| |||||| |||||||||||||||||  ||||| ||||||| |||||    
T  8837478 atcaccaccttatatggaaatctcaaggaacatgagcagaaaatcacaaggtttaaagt 8837536  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 379
Target Start/End: Original strand, 34381642 - 34381749
Alignment:
Q  272 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggtttt 371  Q
    |||||| ||||||||||  |||||||||| |  |||||||||| ||||||||||||||||| |||||||  ||||||||| ||||||||  ||||||||     
T  34381642 atgacaaagtatcatatagtattttaggttatgtttttattagttttatttgcatttgaaggcaaataagatgtaatttagaggagttgttaatggtttg 34381741  T
Q  372 aggaacat 379  Q
    | ||||||    
T  34381742 aagaacat 34381749  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 351
Target Start/End: Original strand, 25373730 - 25373799
Alignment:
Q  282 atcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaattta 351  Q
    ||||| ||||||| ||||  | ||||||| ||| ||| ||||||||||||| ||||||||||||||||||    
T  25373730 atcatgtgatattctaggctatatttttagtagttttctttgcatttgaaggcaaataaattgtaattta 25373799  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 262
Target Start/End: Complemental strand, 14136611 - 14136483
Alignment:
Q  134 ggttcaagaggatagtgacaccgatgaagactcccctggtctagaggtaatgaggttgtttgtgagatgatacaacctctatgttcaataaattggtttg 233  Q
    |||||||||||||||| ||  || |||||| || ||| ||  ||||  |||| ||||||| ||| |||||||||||  |||||| ||| | | ||||||     
T  14136611 ggttcaagaggatagtaacttcggtgaagattcacctagtaaagagaaaatgtggttgttcgtgggatgatacaactactatgtccaaaagaatggttta 14136512  T
Q  234 aaacataatgaataaaatttgattaactt 262  Q
    |||||||||||  ||| ||||||||||||    
T  14136511 aaacataatgacaaaattttgattaactt 14136483  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 13119849 - 13119884
Alignment:
Q  38 ttatttggaaagctcaaggaacatgagcatgaaatc 73  Q
    |||||||||||||||||| |||||||||||||||||    
T  13119849 ttatttggaaagctcaagtaacatgagcatgaaatc 13119884  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 385
Target Start/End: Complemental strand, 22968023 - 22967910
Alignment:
Q  272 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggtttt 371  Q
    ||||| ||||||||||||||||||||||  |  |||||| ||| ||| ||||||| | |||||||||||  || | |||| ||||||||  ||||||||     
T  22968023 atgacggagtatcatatgatattttaggctatgtttttagtagttttctttgcatgttaagacaaataagatggattttagaggagttgtgaatggtttg 22967924  T
Q  372 aggaacatgttgta 385  Q
    |||||||| |||||    
T  22967923 aggaacatattgta 22967910  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 387
Target Start/End: Complemental strand, 17382168 - 17382101
Alignment:
Q  320 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtatt 387  Q
    |||||||||||||||||||||  ||  | ||| |||||||| ||||||||| |||||||| |||||||    
T  17382168 tttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtatt 17382101  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 24517336 - 24517403
Alignment:
Q  320 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtatt 387  Q
    |||||||||||||||||||||  ||  | ||| |||||||| ||||||||| |||||||| |||||||    
T  24517336 tttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtatt 24517403  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 8402731 - 8402616
Alignment:
Q  272 atgacagagtatcatatgatattttaggtaaaatttttattagattta-tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttt 370  Q
    ||||||||| |||||||||||||||||   |  |||||||   ||||| ||||||||||||| |||||||  ||||||||| |||||||| |||||||||    
T  8402731 atgacagagcatcatatgatattttagactatgtttttatgt-atttactttgcatttgaaggcaaataagatgtaatttagaggagttgtcaatggttt 8402633  T
Q  371 taggaacatgttgtatt 387  Q
     |||||||  |||||||    
T  8402632 gaggaacaatttgtatt 8402616  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 387
Target Start/End: Complemental strand, 21829304 - 21829198
Alignment:
Q  281 tatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatg 380  Q
    |||||||||||||||| |   | |||||||||   |||||||||||||||||  ||||||   || ||||| |||||||| ||||||||| ||||||||     
T  21829304 tatcatatgatatttttgactatatttttatttattttatttgcatttgaaggaaaataagaggtcatttagaggagttgtcaatggtttgaggaacatt 21829205  T
Q  381 ttgtatt 387  Q
    |||||||    
T  21829204 ttgtatt 21829198  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 14924550 - 14924492
Alignment:
Q  320 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaaca 378  Q
    ||||||||||||| |||||||  ||||||||| |||||||| ||||||||| |||||||    
T  14924550 tttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggtttgaggaaca 14924492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 32930605 - 32930541
Alignment:
Q  320 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgt 384  Q
    ||||||||||||| |||||||  ||| ||||| |||||||| |||||||||  ||||||| ||||    
T  32930605 tttgcatttgaaggcaaataagatgtcatttagaggagttgtcaatggtttgcggaacattttgt 32930541  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 370
Target Start/End: Complemental strand, 16052458 - 16052360
Alignment:
Q  272 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttt 370  Q
    ||||| ||| ||||||||||||||| ||  |  |||||| ||  ||||||||||||||| |||||||||| ||  | ||| |||||||| |||||||||    
T  16052458 atgacggagcatcatatgatatttttggctatgtttttagtacttttatttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggttt 16052360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 376
Target Start/End: Original strand, 31436419 - 31436517
Alignment:
Q  278 gagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaa 376  Q
    ||||||||||||||||||||    | ||||||| |   ||||| ||||||||||| |||||||  ||||||||| |||||||| ||||| ||| |||||    
T  31436419 gagtatcatatgatattttatactatatttttagttattttatctgcatttgaaggcaaataagatgtaatttagaggagttgtcaatgatttgaggaa 31436517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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