View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_73 (Length: 397)
Name: NF0812_low_73
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_73 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 397
Target Start/End: Complemental strand, 37148182 - 37147786
Alignment:
| Q |
17 |
ggtatttggccttgtttataattaaacttgttagagtttttggcnnnnnnnnncttcaactcatc-ggttccgtcgaaactttctcagtccattatcttc |
115 |
Q |
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| T |
37148182 |
ggtatttggccttctttataattaaacttgttagagtttttggctttttttttcttcaactccgccggttccgtcgaaactttctcagcccattatcttc |
37148083 |
T |
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| Q |
116 |
ctcacaattccattccagtagcacgcatgagaatcaagagaattgaaggaaagactagaactagaaactaaaatct--------------aacataatat |
201 |
Q |
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| T |
37148082 |
agcacaatttcattccagaagcacgcatgagaatcaggagaattgaaggaaagactagaactagaaactaaaatctttccacccaaatctaacataatat |
37147983 |
T |
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| Q |
202 |
cctaaaatacttcagaaacaattaaattaaattgtaaataaaattata-aggactttgaaatcaaatttcattagcaacaaaaatggtgtagaaacccag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37147982 |
cctaaaatacttcagaaacaattaaattaaattgtaaataaaattatttaggactttgaaatcaaatttcattagcaacaaaaatggtgtagaaacccag |
37147883 |
T |
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| Q |
301 |
acctgaacatgtaaccaaaaaagtaatagccagacccgaacattagagaatacagagcttcaggctatggttttcgtaatggattgataatcgctat |
397 |
Q |
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||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37147882 |
acctgaacatgtaactataaaaataatagccagacccgaacattagagaatacagagcttcaggctatggttttcgtaatggattgataatcgctat |
37147786 |
T |
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