View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_75 (Length: 391)
Name: NF0812_low_75
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_75 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 26147224 - 26146873
Alignment:
| Q |
11 |
cacagacagtccaaatctggtttggattaagcttccttgtgtgaatataaaccatatgactacaaacagaaataagatggtcaattacctttgttttata |
110 |
Q |
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| T |
26147224 |
cacagacagtccaaatctggtttggattaagcttccttgtgtgaatataaaccatatgactacaaacagaaataagatggtcaattacctttgttttata |
26147125 |
T |
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| Q |
111 |
ggtccacatagcttataaaagtctggaaaaccttgaagtctagcattttctcgaattgataacacatgcataatttcctggttaaacaaataaggatgtc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26147124 |
ggtccacatagcttataaaagtctggaaaaccttgaagtctagcattttctcgaattgataacacatgcataatttcctggttaaacaaataaggatgtc |
26147025 |
T |
|
| Q |
211 |
atctaaacattgaattttgcttcaataagtttagcaaggcctagagcttgggtgattggaagttttattgccatttcagtgggacacgattacccaagtt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| |
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| T |
26147024 |
atctaaacattgaattttgcttcaataagtttagcaaggcctatagcttgggtgattggaagttttatttccatttcggtgggacacgattgcccaagtt |
26146925 |
T |
|
| Q |
311 |
ctcaaattgagcttgatactccgacaccaaacctgttcgttgaagtttaaac |
362 |
Q |
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| T |
26146924 |
ctcaaattgagcttgatactccgacaccaaacctgtttgttgaagtttaaac |
26146873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 33848219 - 33848316
Alignment:
| Q |
64 |
atatgactacaaacagaaataagatggtcaa-ttacctttgttttataggtccacatagcttataaaagtctggaaaaccttgaagtctagcattttc |
160 |
Q |
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||||||||||||||||||||||||| || |||||||| ||| | || |||||| |||||||||||||||||||||||||| | |||||||||||| |
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| T |
33848219 |
atatgactacaaacagaaataagattacaaatttacctttctttaacagatccacaaagcttataaaagtctggaaaaccttgtaatctagcattttc |
33848316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 28216283 - 28216232
Alignment:
| Q |
120 |
agcttataaaagtctggaaaaccttgaagtctagcattttctcgaattgata |
171 |
Q |
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|||||||||||||||||||||||||| | |||||||||| | ||||| |||| |
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| T |
28216283 |
agcttataaaagtctggaaaaccttgtaatctagcatttccacgaatggata |
28216232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 28227135 - 28227084
Alignment:
| Q |
120 |
agcttataaaagtctggaaaaccttgaagtctagcattttctcgaattgata |
171 |
Q |
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|||||||||||||||||||||||||| | |||||||||| | ||||| |||| |
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| T |
28227135 |
agcttataaaagtctggaaaaccttgtaatctagcatttccacgaatggata |
28227084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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