View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_79 (Length: 385)
Name: NF0812_low_79
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_79 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 23694023 - 23693793
Alignment:
| Q |
16 |
attcatcttccaagtccaaataaatccacatcagtaacaaacaatcacaagaagaacacacacaaattagtatccctgctgaagaataaaattgaagaat |
115 |
Q |
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| T |
23694023 |
attcatcttccaagtccaaataaatccacatcagtaacaaacaatcacaagaa---cacacacaaattggtatctcggctgaagaataaaattgaagaat |
23693927 |
T |
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| Q |
116 |
ggagttggaatcaaagacgaaaatatcgatctgggcagtaaggtggacaaatcaaaaaataagaattaagaactcagagaag-tttatgtaggaatttat |
214 |
Q |
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| T |
23693926 |
ggagttggaatcaaagacgaaaacatcgatctggacagtaaggtggacaaatcaaaaaataagaattaagaactcagagaggttttatgtaggaatttat |
23693827 |
T |
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| Q |
215 |
ggttttcttctgtctggtaccgttgtagaagatg |
248 |
Q |
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| T |
23693826 |
ggttttcttctgtttggtaccattgtagaagatg |
23693793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 10291933 - 10292110
Alignment:
| Q |
16 |
attcatcttccaagtccaaataaatccacatcagtaacaaacaatcacaagaagaacacacacaaattagtatccctgctgaagaataaaattgaagaat |
115 |
Q |
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| T |
10291933 |
attcatcttccaactccaaataaatccacatcagtaacaaacaatcacaagaagaacac--acaaattggtatccctgctgaagaataaaattgaagaat |
10292030 |
T |
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| Q |
116 |
ggagttggaatcaaagacgaaaatatcgatctgggcagtaaggtggacaaatcaaaaaataagaattaagaactcagaga |
195 |
Q |
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| T |
10292031 |
ggagttggaatcaaagacgaaaacatcgatctggacagtaaggtggacaaatcaaaaaataagaattaagaactcagaga |
10292110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 10292274 - 10292339
Alignment:
| Q |
183 |
aagaactcagagaagtttatgtaggaatttatggttttcttctgtctggtaccgttgtagaagatg |
248 |
Q |
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| T |
10292274 |
aagaactcagagaggtttatgtaggaatttatggttttcttcagtctgataccgttgtagaagatg |
10292339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 23654096 - 23653874
Alignment:
| Q |
16 |
attcatcttccaagtccaaataaatccacatcagtaacaaacaatcacaagaagaacacacacaaattagtatccctgctgaagaataaaattgaagaat |
115 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||| |
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| T |
23654096 |
attcatcttccaagtccaaataaatccacatcaataa-aaacaatcacaagaa---cacacacaaattggtatctcggctgaagaataaaattgaagaat |
23654001 |
T |
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| Q |
116 |
ggagttggaatcaaagacgaaaatatcgatctgggcagtaaggtggac-aaatcaaaaaataagaattaagaactcagagaagtttatgtaggaatttat |
214 |
Q |
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| T |
23654000 |
gaagttggaatcaaagacgaaaacatcgatctggacagtaaggtggacaaaatcaaaaaataagaat-------tcagagaagtttatgtaggaatttat |
23653908 |
T |
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| Q |
215 |
ggttttcttctgtctggtaccgttgtagaagatg |
248 |
Q |
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|| ||||||||||||| |||| |||||||||||| |
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| T |
23653907 |
ggctttcttctgtctgataccattgtagaagatg |
23653874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 48152326 - 48152484
Alignment:
| Q |
16 |
attcatcttccaagtccaaataaatccacatcagtaacaaacaatcacaagaagaacacacacaaattagtatccctgctgaagaataaaattgaagaat |
115 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||| ||||||| || ||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
48152326 |
attcatcttccgagtccaaataaatccatctcagtaacaaacaaacacaaga--aaaacacacaaattggtatcccggctgaagaataaaattgaagaac |
48152423 |
T |
|
| Q |
116 |
ggagttggaatcaaagacgaaaatatcgatctgggcagtaaggtggacaaatcaaaaaataagaat |
181 |
Q |
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|||| |||||| |||||| ||| || ||| ||||||||||||||||||||| ||||||||| |
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| T |
48152424 |
tgagtcggaatcgaagacggaaacat-----tggacagtaaggtggacaaatcaaagaataagaat |
48152484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 48152514 - 48152603
Alignment:
| Q |
197 |
gtttatgtaggaatttatggttttcttctgtctggtaccgttgtagaagatgnnnnnnntggattcatggtgatgaagaaattctcatat |
286 |
Q |
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|||||||||||| |||||||||||||| ||||||||| ||||| ||||||| | | ||||||||||| |||| |||||||||| |
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| T |
48152514 |
gtttatgtaggagtttatggttttctttagtctggtactgttgtggaagatgaaaaaaattggttcatggtgataaagagattctcatat |
48152603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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