View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_8 (Length: 655)

Name: NF0812_low_8
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_8
NF0812_low_8
[»] chr5 (2 HSPs)
chr5 (1-315)||(4284361-4284669)
chr5 (428-627)||(4284049-4284248)
[»] chr7 (2 HSPs)
chr7 (519-596)||(23428538-23428615)
chr7 (255-311)||(23429422-23429478)
[»] chr2 (2 HSPs)
chr2 (512-566)||(25978334-25978388)
chr2 (510-563)||(4039751-4039804)
[»] chr4 (2 HSPs)
chr4 (428-469)||(8682280-8682321)
chr4 (428-467)||(6348737-6348776)
[»] chr6 (1 HSPs)
chr6 (510-566)||(16999818-16999874)
[»] chr8 (1 HSPs)
chr8 (510-566)||(4183535-4183591)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 4284669 - 4284361
Alignment:
Q  1 ttcaacaataagaaggtgtattagcnnnnnnncaaaacaaagagtgtactaatagcactactcccaataacaagtttctttacaatttcgcgggcacagt 100  Q
    |||||||||||||||||||||||||        |||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  4284669 ttcaacaataagaaggtgtattagcaaa-----aaaaaaaagagtgtactaatagcactactccaaataacaagtttcttcacaatttcgcgggcacagt 4284575  T
Q  101 ttcgcagttcacattttcgcggttcactggttttacagttgaaacttggaatgcttcattccttcgagaatttgcagttccaaacctaaannnnnnnctc 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||       |||    
T  4284574 ttcgcagttcacattttcgcggttcactggttttgcagttgaaacttggaatgcttcattccttcgagaatttgcagttcaaaacctaaa-ttttttctc 4284476  T
Q  201 agtaacaatcaaatcaaattcgaacttcttcaagttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttctaga 300  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4284475 agtaataatcaaatcaaattcgaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttctaga 4284376  T
Q  301 agacaccaatggcgg 315  Q
    |||||||||||||||    
T  4284375 agacaccaatggcgg 4284361  T

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Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 428 - 627
Target Start/End: Complemental strand, 4284248 - 4284049
Alignment:
Q  428 aaatccaaaatcaatttccatctcaaaaccctaaacccccaacttcaccaaatcccgacggaaatcactgccgatctccctgttaaccaccgtcactctc 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  4284248 aaatccaaaatcaatttccatctcaaaaccctaaacccccaacttcaccaaatcccgacagaaatcactgccgatctccccgttaaccaccgtcactctc 4284149  T
Q  528 tctattcctccggccacgtttgtttcatcactcctcgaatcctcatcgtcgatcttttaacaaacaaactccctacatcaacaatctccggtatattaat 627  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4284148 tctattcctccggccacgtttgtttcatcactcctcgaatcctcatcgtcgatcttttaacaaacaaactccctacatcaacaatctccggtatgttaat 4284049  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 519 - 596
Target Start/End: Complemental strand, 23428615 - 23428538
Alignment:
Q  519 gtcactctctctattcctccggccacgtttgtttcatcactcctcgaatcctcatcgtcgatcttttaacaaacaaac 596  Q
    |||||||| |||| ||||||| ||||||||||||||||| ||||| | || ||||||||||||| |||||||| ||||    
T  23428615 gtcactctttctactcctccgaccacgtttgtttcatcattcctcaagtcttcatcgtcgatctgttaacaaataaac 23428538  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 23429478 - 23429422
Alignment:
Q  255 caatggttcttcaattccacgaacacataatcacagagcttctagaagacaccaatg 311  Q
    ||||||||||||||||||||  | ||||||||||  | |||||||||||||||||||    
T  23429478 caatggttcttcaattccacacaaacataatcacttaacttctagaagacaccaatg 23429422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 512 - 566
Target Start/End: Original strand, 25978334 - 25978388
Alignment:
Q  512 aaccaccgtcactctctctattcctccggccacgtttgtttcatcactcctcgaa 566  Q
    ||||||| || |||||| ||||||||||||||| |||||||||||||||||||||    
T  25978334 aaccaccatcgctctctatattcctccggccacatttgtttcatcactcctcgaa 25978388  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 563
Target Start/End: Complemental strand, 4039804 - 4039751
Alignment:
Q  510 ttaaccaccgtcactctctctattcctccggccacgtttgtttcatcactcctc 563  Q
    ||||||||| || |||||| ||||||||||||||| ||||||| ||||||||||    
T  4039804 ttaaccaccatcgctctctttattcctccggccacatttgtttgatcactcctc 4039751  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 428 - 469
Target Start/End: Complemental strand, 8682321 - 8682280
Alignment:
Q  428 aaatccaaaatcaatttccatctcaaaaccctaaacccccaa 469  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  8682321 aaatccaaaatcaatttccatctcaaaaccctaaaccaccaa 8682280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 467
Target Start/End: Original strand, 6348737 - 6348776
Alignment:
Q  428 aaatccaaaatcaatttccatctcaaaaccctaaaccccc 467  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  6348737 aaatacaaaatcaatttgcatctcaaaaccctaaaccccc 6348776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 566
Target Start/End: Complemental strand, 16999874 - 16999818
Alignment:
Q  510 ttaaccaccgtcactctctctattcctccggccacgtttgtttcatcactcctcgaa 566  Q
    ||||||||| || |||||| ||||||||||||||| ||||||| |||||||||||||    
T  16999874 ttaaccaccatcgctctctatattcctccggccacatttgttttatcactcctcgaa 16999818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 510 - 566
Target Start/End: Complemental strand, 4183591 - 4183535
Alignment:
Q  510 ttaaccaccgtcactctctctattcctccggccacgtttgtttcatcactcctcgaa 566  Q
    ||||||||| || |||||| |||||||||||||||  |||||| |||||||||||||    
T  4183591 ttaaccaccatcgctctctatattcctccggccacaattgttttatcactcctcgaa 4183535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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