View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_80 (Length: 382)
Name: NF0812_low_80
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_80 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 117 - 270
Target Start/End: Original strand, 39929161 - 39929316
Alignment:
| Q |
117 |
tcctttggtcaaaatgaatatatatcacggaagaaaaatacatacaaattctttgta------acatttaatttgttggtaatatatatagttaaacaag |
210 |
Q |
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| T |
39929161 |
tcctttggtcaaaatgaatatatatcacggaagaaaaatacatacaaattctttgtattgtcgacatttaagttgttggtaatat----agttaaacaag |
39929256 |
T |
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| Q |
211 |
aattatcgtataagtacaatgaataacgaaaagaactgtgtcaacgttggatatgttgaa |
270 |
Q |
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| T |
39929257 |
aattattgtataagtacaatgaataacgaaaagaactgtgtgaacgttggatatgttgaa |
39929316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 39929444 - 39929520
Alignment:
| Q |
278 |
atagatttaacgtaaaggctagactctcccaatgacaaattatgattttaattattgtttggaaaagagacatacat |
354 |
Q |
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| T |
39929444 |
atagatttatcgtaaaggctagactctcccaatgacaaattatgattttaattattgtttggaaaagagacatacat |
39929520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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