View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_82 (Length: 375)

Name: NF0812_low_82
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_82
NF0812_low_82
[»] chr3 (2 HSPs)
chr3 (1-350)||(2636970-2637318)
chr3 (226-297)||(2658263-2658335)
[»] scaffold0201 (1 HSPs)
scaffold0201 (2-181)||(16342-16520)
[»] chr8 (2 HSPs)
chr8 (2-181)||(29346798-29346976)
chr8 (1-204)||(4461002-4461204)
[»] chr4 (1 HSPs)
chr4 (2-181)||(14443478-14443656)
[»] chr2 (1 HSPs)
chr2 (2-181)||(19500963-19501145)
[»] chr1 (1 HSPs)
chr1 (2-153)||(35788939-35789089)
[»] chr7 (3 HSPs)
chr7 (27-181)||(6468128-6468280)
chr7 (24-181)||(2731509-2731665)
chr7 (243-309)||(27982612-27982679)
[»] scaffold0097 (1 HSPs)
scaffold0097 (227-350)||(35864-35989)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 2636970 - 2637318
Alignment:
Q  1 ttttattagtgactgtcatgattttgtttggtaatttagatggtggttctgttagttttgttaatcgctcttgtaatatagctgctcatgagctcgctct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2636970 ttttattagtgactgtcatgattttgtttggtaatttagatggttgttctgttagttttgttaatcgctcttgtaatgtagctgctcatgagctcgctct 2637069  T
Q  101 ggctgcaaaaactttaggatcatgtacttgggtggggaatgcccctcttaaagtctggtctgtgttctctcttggtttgttctagtaatgaactagtgga 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2637070 ggctgcaaaaactctaggatcatgtacttgggtggggaatgcccttcttaaagtctggtctgtgttctctcttggtttgttctagtaatgaactagtgga 2637169  T
Q  201 ttgtcnnnnnnnnnnnnnnnntagctatgtattgcccacattttcattacttgatcctccaagtgaaaagggtatttgatttgttttcagttattttgta 300  Q
    |||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2637170 ttgtc-aaaaaaaaaaaaaaatagctatgtattgcccacattttcattacttgatcctccaagtgaaaagggtatttgatttgttttcagttattttgta 2637268  T
Q  301 tcatcagccgcaagtcatcccatcttattctgaaggacactgacactgat 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2637269 tcatcagccgcaagtcatcccatcttattctgaaggacactgacactgat 2637318  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 2658335 - 2658263
Alignment:
Q  226 tatgtattgcccacattttcattacttgatcctccaagtgaaa-agggtatttgatttgttttcagttatttt 297  Q
    |||||||  ||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||    
T  2658335 tatgtatatcccacattttcattacttgatcctccaggtggaagagggtatttgatttgttttcagttatttt 2658263  T

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Target: scaffold0201 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 16520 - 16342
Alignment:
Q  2 tttattagtgactgtcatgattttgtttggtaatttagatggtggttctgttagttttgttaatcgctcttgtaatatagctgctcatgagctcgctctg 101  Q
    |||||||||||||||||||| || |||||||| ||||| |||| |||||||||| ||||||||||||||||||||| |||||||||||||||| |||| |    
T  16520 tttattagtgactgtcatgactt-gtttggtagtttagttggtagttctgttagctttgttaatcgctcttgtaatgtagctgctcatgagcttgctcag 16422  T
Q  102 gctgcaaaaactttaggatcatgtacttgggtggggaatgcccctcttaaagtctggtctgtgttctctcttggtttgtt 181  Q
    ||||||||| |  |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  16421 gctgcaaaatcaataggatcacgtacttgggtggggaatgcccctcttaaagtctggtctttgttctctcttgatttgtt 16342  T

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Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 29346976 - 29346798
Alignment:
Q  2 tttattagtgactgtcatgattttgtttggtaatttagatggtggttctgttagttttgttaatcgctcttgtaatatagctgctcatgagctcgctctg 101  Q
    |||||||||||||||||||| || |||||||| ||||| |||| |||||||||| ||||||||||||||||||||| |||||||||||||||| |||| |    
T  29346976 tttattagtgactgtcatgactt-gtttggtagtttagttggtagttctgttagctttgttaatcgctcttgtaatgtagctgctcatgagcttgctcag 29346878  T
Q  102 gctgcaaaaactttaggatcatgtacttgggtggggaatgcccctcttaaagtctggtctgtgttctctcttggtttgtt 181  Q
    ||||||||| |  |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  29346877 gctgcaaaatcaataggatcacgtacttgggtggggaatgcccctcttaaagtctggtctttgttctctcttgatttgtt 29346798  T

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Target: chr8; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 4461002 - 4461204
Alignment:
Q  1 ttttattagtgactgtcatgattttgtttggtaatttagatggtggttctgttagttttgttaatcgctcttgtaatatagctgctcatgagctcgctct 100  Q
    ||||||||||||||||||||| || |||||||| ||||| |||| |||||||||| ||| ||||| ||||||||||| ||| ||||||||||||  |||     
T  4461002 ttttattagtgactgtcatgactt-gtttggtagtttagttggtagttctgttagctttattaattgctcttgtaatgtaggtgctcatgagcttactca 4461100  T
Q  101 ggctgcaaaaactttaggatcatgtacttgggtggggaatgcccctcttaaagtctggtctgtgttctctcttggtttgttctagtaatgaactagtgga 200  Q
    |||||||||| |  |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||| |  |||||||  ||||||    
T  4461101 ggctgcaaaatccataggatcatgtacttgggtggggaatgcccgtcttaaagtctggtctttgttctcttttggtttgtttttttaatgaaagagtgga 4461200  T
Q  201 ttgt 204  Q
    ||||    
T  4461201 ttgt 4461204  T

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Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 14443656 - 14443478
Alignment:
Q  2 tttattagtgactgtcatgattttgtttggtaatttagatggtggttctgttagttttgttaatcgctcttgtaatatagctgctcatgagctcgctctg 101  Q
    |||||||||||||||||||| || |||||||| ||||| |||| |||||||||| ||||||||||||||||||||| |||||||||||||||| |||| |    
T  14443656 tttattagtgactgtcatgactt-gtttggtagtttagttggtagttctgttagctttgttaatcgctcttgtaatgtagctgctcatgagcttgctcag 14443558  T
Q  102 gctgcaaaaactttaggatcatgtacttgggtggggaatgcccctcttaaagtctggtctgtgttctctcttggtttgtt 181  Q
    ||||||||| |  |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  14443557 gctgcaaaatcaataggatcacgtacttgggtggggaatgcccctcttaaagtctggtctttgttctctcttgatttgtt 14443478  T

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Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 19501145 - 19500963
Alignment:
Q  2 tttattagtgactgtcatgattttgtttggtaatttagatggtggttctgttagttttgttaatcgctcttgtaatata----gctgctcatgagctcgc 97  Q
    |||||||||||||||||||| || |||||||| | ||| |||| |||||||||| ||||||||||||||||||||| ||    | |||||||||||| ||    
T  19501145 tttattagtgactgtcatgactt-gtttggtagtatagttggtagttctgttagctttgttaatcgctcttgtaatgtagttggttgctcatgagcttgc 19501047  T
Q  98 tctggctgcaaaaactttaggatcatgtacttgggtggggaatgcccctcttaaagtctggtctgtgttctctcttggtttgtt 181  Q
    || | |||||||| |  |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19501046 tcagactgcaaaatcaataggatcacgtacttgggtggggaatgcccctcttaaagtctggtctttgttctctcttggtttgtt 19500963  T

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Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 35788939 - 35789089
Alignment:
Q  2 tttattagtgactgtcatgattttgtttggtaatttagatggtggttctgttagttttgttaatcgctcttgtaatatagctgctcatgagctcgctctg 101  Q
    |||||||||||||||||||| || |||||||| ||||| |||| |||||||||| ||||||||||||||||||||| |||||||||||||||| |||| |    
T  35788939 tttattagtgactgtcatgactt-gtttggtagtttagttggtagttctgttagctttgttaatcgctcttgtaatgtagctgctcatgagcttgctcag 35789037  T
Q  102 gctgcaaaaactttaggatcatgtacttgggtggggaatgcccctcttaaag 153  Q
    ||||||||| |  ||| |||| ||| ||||||||||||||||||||||||||    
T  35789038 gctgcaaaatcaatagaatcacgtatttgggtggggaatgcccctcttaaag 35789089  T

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Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 6468280 - 6468128
Alignment:
Q  27 tttggtaatttagatggtggttctgttagttttgttaatcgctcttgtaatatagctgctcatgagctcgctctggctgcaaaaactttaggatcatgta 126  Q
    ||||||| ||||| |||| ||||||| || ||||||||||||||||||||| |||||||||||||||| |||| |||||||||| |  |||||||| |||    
T  6468280 tttggtagtttagttggtagttctgtcagctttgttaatcgctcttgtaatgtagctgctcatgagcttgctcaggctgcaaaatccataggatcacgta 6468181  T
Q  127 cttgggtggggaatgcccctcttaaagtctggtctgtgttctctcttggtttgtt 181  Q
    ||||||||||||||||||| |||||||  |||| | |||||||||||||||||||    
T  6468180 cttgggtggggaatgccccccttaaag--tggtttttgttctctcttggtttgtt 6468128  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 2731509 - 2731665
Alignment:
Q  24 ttgtttggtaatttagatggtggttctgttagttttgttaatcgctcttgtaatatagctgctcatgagctcgctctggctgcaaaaactttaggatcat 123  Q
    ||||||||||  |||| ||||||||||||||  |||||||||||||||| |||| |||||||||||||||| |||| |||  |||||    ||||||||     
T  2731509 ttgtttggtagcttagttggtggttctgttaactttgttaatcgctcttctaatgtagctgctcatgagcttgctcaggc-ccaaaatgcataggatcac 2731607  T
Q  124 gtacttgggtggggaatgcccctcttaaagtctggtctgtgttctctcttggtttgtt 181  Q
    |||||| | || ||||||| |||||||||||||||||| |||||||||||||||||||    
T  2731608 gtacttagatgaggaatgctcctcttaaagtctggtctttgttctctcttggtttgtt 2731665  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 27982679 - 27982612
Alignment:
Q  243 ttcattacttgatcctccaagtg-aaaagggtatttgatttgttttcagttattttgtatcatcagcc 309  Q
    ||||||||||| ||||| | ||| |||| ||||||||||||||||||||||||||| |||||||||||    
T  27982679 ttcattacttgctcctctaggtggaaaatggtatttgatttgttttcagttattttatatcatcagcc 27982612  T

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Target: scaffold0097 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 227 - 350
Target Start/End: Original strand, 35864 - 35989
Alignment:
Q  227 atgtattgcccacattttcattacttgatcctccaagtgaaaa--gggtatttgatttgttttcagttattttgtatcatcagccgcaagtcatcccatc 324  Q
    |||||||||||||||||||||||||||| |||||| ||| |||  |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  35864 atgtattgcccacattttcattacttgaacctccaggtggaaaaggggtatttgatttgctttcagttagtttgtatcatcagccacaagtcatcccatc 35963  T
Q  325 ttattctgaaggacactgacactgat 350  Q
    ||||| |||| |||||||||||||||    
T  35964 ttattttgaatgacactgacactgat 35989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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