View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_83 (Length: 372)
Name: NF0812_low_83
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_83 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 7901082 - 7901439
Alignment:
| Q |
1 |
ctaccaaattaacctagctcactttttatccttcatgcaacaaactgatagatcattttaccttctcattacaagtattcaannnnnnnnnnnnnnnnnn |
100 |
Q |
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| T |
7901082 |
ctaccaaattaacctagctcactttttatccttcatgcaacaaactgatagatcatttcaccttctcaatacaagtattcaaacacacacacacacacac |
7901181 |
T |
|
| Q |
101 |
--gtatatatatgtgcaccacaatgtatctgtactcacaagattcaaaataagtaaaaagaagttaaacatcaagcagaacataatggcaagcttgggaa |
198 |
Q |
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| T |
7901182 |
acgtatatatatgtgcaccacaatgtatctgtactcacaagattcaaaataagtaaaaagaagttaaacatcaagcagaacataatggcaagcttgggaa |
7901281 |
T |
|
| Q |
199 |
gtttcatgtctgtattaaactttctcttatttctctttgttggtttaatctcttcatctgaagctgccataaagaaataccagtttgatgtgagttatta |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901282 |
gtttcatgtctgtattaaactttctcttatttctctttgttggtttaatctcttcatctgaagctgccataaagaaataccagtttgatgtgagttatta |
7901381 |
T |
|
| Q |
299 |
tatttcgatcatattcataccttaaccactatagctagcaatgcatggttcccttaat |
356 |
Q |
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| T |
7901382 |
tattttgatcatattcataccttaactactatagctagcaatgcatggttcccttaat |
7901439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 155 - 356
Target Start/End: Original strand, 31213273 - 31213478
Alignment:
| Q |
155 |
aaagaagttaaacatcaagcagaacataatggcaagcttgggaagtttcatgtctgtattaaactttctcttatttctctttgttggtttaatctcttca |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
31213273 |
aaagaagttaaacatcaagcagaacataatggcaagcttgggaagtttcacgtctgtattaaactttctgttatttctctttgttggtttattctcttca |
31213372 |
T |
|
| Q |
255 |
tctgaagctgccataaagaaataccagtttgatgtgagttattatatttcgatcatattca---taccttaacc-actatagctagcaatgcatggttcc |
350 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||| |||||| ||| ||||||| | ||||||| |||||||||||||||||| |||||| |
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| T |
31213373 |
tctgaagctgccataaggaaataccagtttgatgtgagttataatattttgataatattcagcatgccttaactgactatagctagcaatgcaaggttcc |
31213472 |
T |
|
| Q |
351 |
cttaat |
356 |
Q |
| |
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|||||| |
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|
| T |
31213473 |
cttaat |
31213478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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