View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_86 (Length: 370)
Name: NF0812_low_86
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_86 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 79 - 338
Target Start/End: Complemental strand, 36032284 - 36032019
Alignment:
| Q |
79 |
ttaaataactcatatttttaaaattaattaaatgatatgtttatgtataaatgagttttatttgatgttgtgactatataaataatttttttaggagctt |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
36032284 |
ttaaataactcatatttttaaaattaattaaatgatatgtttatgtataaatgagttttatttgatgttgtgactatataaatattttttttaggggctt |
36032185 |
T |
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| Q |
179 |
--nnnnnnnnnnnnnttttaggaaaagatactcacaacatttcattattaatgacataattgatacaatcgggtactt----caaaataaactacagatt |
272 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
36032184 |
aaaaaaaatatatttttttaggaaaagatactcacaacatttcattactaatgacataattgatacaatcgggtacttcaaacaaaataaactacgggac |
36032085 |
T |
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| Q |
273 |
taactgataaagtggcttctccagaaagaatatgagctgtcatatttacttgttttcaactaaact |
338 |
Q |
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|| ||||||||||||||||||| |||||||||||| |||||||||| |||||||| |||||||| |
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| T |
36032084 |
tagatgataaagtggcttctccaataagaatatgagccgtcatatttatttgttttcgactaaact |
36032019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 10037853 - 10037821
Alignment:
| Q |
234 |
aattgatacaatcgggtacttcaaaataaacta |
266 |
Q |
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| T |
10037853 |
aattgatacaatcgggtacttcaaaataaacta |
10037821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 36032337 - 36032301
Alignment:
| Q |
24 |
aaattaaatttacttaaacacacctgcaaattaagaa |
60 |
Q |
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|||| |||||||||||||||||||||||||| ||||| |
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| T |
36032337 |
aaataaaatttacttaaacacacctgcaaatgaagaa |
36032301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 192 - 309
Target Start/End: Complemental strand, 32112006 - 32111889
Alignment:
| Q |
192 |
ttttaggaaaagatactcacaacatttcattattaatgacataattgatacaatcgggtacttcaaaataaactacagatttaactgataaagtggcttc |
291 |
Q |
| |
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||||| |||||||| |||| | |||||||||| |||| ||||||||||||||||||||||||||||||||||||| | || ||| |||||||||||| |
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| T |
32112006 |
ttttaagaaaagatgctcaaagcatttcattactaataacataattgatacaatcgggtacttcaaaataaactatgggactagctgctaaagtggcttc |
32111907 |
T |
|
| Q |
292 |
tccagaaagaatatgagc |
309 |
Q |
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||| |||||||||||| |
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| T |
32111906 |
cccaacaagaatatgagc |
32111889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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