View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_9 (Length: 644)
Name: NF0812_low_9
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 178 - 635
Target Start/End: Complemental strand, 1687968 - 1687501
Alignment:
| Q |
178 |
aatccttatcttgtatcctaggatcacaagttagcattttcctaaattaaaagagcaaacttatttattaaagaacttgtattaacatattaatgagaac |
277 |
Q |
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| T |
1687968 |
aatccttatattgtat--taggaccacaagttagcattttcctaaattaaaagagcaaacttatttattaaaggactggtattaacatattaatgagaac |
1687871 |
T |
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| Q |
278 |
atgtaagcatcattaattataaaaatgaacaatcgatatggaaatatgtatagcatacaatgtcgaaatacaagactccaaaattaaggctggtctnnnn |
377 |
Q |
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| T |
1687870 |
atgtaagcatcattaattataaaaatgaacaatcgatatggaattatgtataacatacaatgtcgaaatacaagactccaaaattaaggctggtctaaaa |
1687771 |
T |
|
| Q |
378 |
nnnnnnt------------tcacaattaatcagatttgtcaattgtctattaatgggtcatgctaaaacaaaagatggtttccttttaatttgaacataa |
465 |
Q |
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| T |
1687770 |
aaaaattcaatataaaatttcacaattaatcagatttgtcaattgcctattaatgggtcatgctaaaacaaaagatggtttccttttaatttgaacataa |
1687671 |
T |
|
| Q |
466 |
attaaatatctcaactaatggaaacttcccaacattaatatataatggaatatgatatcaacagtgatgaaaatataccttgaacgttatgcactcgagt |
565 |
Q |
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| T |
1687670 |
attaaatatctcaactaatggaaacttcccaacattaatatataatggaatatgatatcaacagtgatgaaaatataccttgaacgttatgcactcgagt |
1687571 |
T |
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| Q |
566 |
taaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatgttcatct |
635 |
Q |
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| T |
1687570 |
taaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatgttcatct |
1687501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 531 - 634
Target Start/End: Complemental strand, 41918726 - 41918623
Alignment:
| Q |
531 |
gatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatgtt |
630 |
Q |
| |
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|||||||||||||||||||| |||||||| || ||| |||||| ||| || ||| ||| |||||||||| ||||||||||||||||||||||| |
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| T |
41918726 |
gatgaaaatataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctcttatgtt |
41918627 |
T |
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| Q |
631 |
catc |
634 |
Q |
| |
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|||| |
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| T |
41918626 |
catc |
41918623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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