View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_93 (Length: 352)
Name: NF0812_low_93
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_93 |
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| [»] scaffold0854 (1 HSPs) |
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| [»] scaffold0836 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 29 - 259
Target Start/End: Original strand, 25389356 - 25389586
Alignment:
| Q |
29 |
ttaattcttttcaatgaagtagtagtatatgtgagtataatttgtttccttctaaatttagctactgaccaataaagaagnnnnnnnnctttcaaaggca |
128 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25389356 |
ttaattattttcaatgaagtagtagtatatgtgagtataatttgtttccttctaaatttagctactgaccaataaagaagttttttttctttcaaaggca |
25389455 |
T |
|
| Q |
129 |
caattaagtagttacgaattagaattaggtttattgcatatgatatgagttatatatatggtgcatgagtatgaattgtaacatagttttaattgtattt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25389456 |
caattaagtagttacgaattagaattaggtttattgcatatgatatgagttatatatatgatgcatgagtatgaattgtaacatagttttaattgtattt |
25389555 |
T |
|
| Q |
229 |
ttatagtattttatttctagcaataaataat |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
25389556 |
ttatagtattttatttctagcaataaataat |
25389586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 25389622 - 25389685
Alignment:
| Q |
257 |
aatcaacaatttttaatcctcaaacattttatgaatgtgaaagtatataattaggtccatttat |
320 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25389622 |
aatcaacaatttttaatcctcaaacattttatgaatgtgaaagtatataattaggtccatttat |
25389685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 28 - 255
Target Start/End: Original strand, 16975452 - 16975675
Alignment:
| Q |
28 |
gttaattcttttcaatgaagtagtagtatatgtgagtataatttgtttccttctaaatttagctactga-----------ccaataaagaagnnnnnnnn |
116 |
Q |
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|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||| | |||| |
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| T |
16975452 |
gttaattcttgtcaatgaagta---gtatatgtaagtataatttgtttccttctaaatttagccactgaacatcttgttcacaattatgaagtttttttt |
16975548 |
T |
|
| Q |
117 |
ctttcaaaggcacaattaagtagttacgaattagaattaggtttattgcatatgatatgagttatatatatggtgcatgagtatgaattgtaacatagtt |
216 |
Q |
| |
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|| || |||||||||||||| ||||| ||||||| | ||||||||||||||||||||||||| | || |||||||||||||||||||||||| |
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| T |
16975549 |
ctctctaaggcacaattaagaagttaggaattag-----gttttattgcatatgatatgagttataca----atgtatgagtatgaattgtaacatagtt |
16975639 |
T |
|
| Q |
217 |
ttaattgtatttttatagtattttatttctagcaataaa |
255 |
Q |
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||||||||| ||||||| ||||| |||||||||||||| |
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| T |
16975640 |
ttaattgtaattttata-tattt--tttctagcaataaa |
16975675 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 28 - 259
Target Start/End: Original strand, 38437866 - 38438104
Alignment:
| Q |
28 |
gttaattcttttcaatgaagtagtagtatatgtgagtataatttgtttccttctaaatttagctactgaccaataaagaagnnnnnnnnctttcaaaggc |
127 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38437866 |
gttaattcttttcaatgaagtagtggtatatgtgagtataatttgtttccttctaaatttagctactgaccaataaagaagttttttttctttcaaaggc |
38437965 |
T |
|
| Q |
128 |
acaattaagtagttacgaattagaattaggtttattgcatatgatatgagttatat-------atatggtgcatgagtatgaattgtaacatagttttaa |
220 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38437966 |
acaattaagtagttacgaattagaattaggtttattgcatatgatatgagttatatatatgtaatatggtgcatgagtatgaattgtaacatagttttaa |
38438065 |
T |
|
| Q |
221 |
ttgtatttttatagtattttatttctagcaataaataat |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
38438066 |
ttgtatttttatagtattttatttctagcaataaataat |
38438104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 38438140 - 38438203
Alignment:
| Q |
257 |
aatcaacaatttttaatcctcaaacattttatgaatgtgaaagtatataattaggtccatttat |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
38438140 |
aatcaacaatttttaatcctcaaacattttatgaatgtgaaagtatataaataggtccatttat |
38438203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 12586957 - 12586912
Alignment:
| Q |
270 |
taatcctcaaacattttatgaatgtgaaagtatataattaggtcca |
315 |
Q |
| |
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||||||||||||| || ||||||||||||||||| |||| |||||| |
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| T |
12586957 |
taatcctcaaacacttgatgaatgtgaaagtatacaattgggtcca |
12586912 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 435 - 372
Alignment:
| Q |
30 |
taattcttttcaatgaagtagtagtatatgtgagtataatttgtttccttctaaatttagctactga |
96 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
435 |
taattcttgtcaatgaagtagta---tatgtgagtataatttgtttccttctaaatttagccactga |
372 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0836
Description:
Target: scaffold0836; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 5180 - 5117
Alignment:
| Q |
257 |
aatcaacaatttttaatcctcaaacattttatgaatgtgaaagtatataattaggtccatttat |
320 |
Q |
| |
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||||| |||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||| |
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|
| T |
5180 |
aatcatcaatttttaatcctcaaacacttgatgaatgtgaaagtataaaattagatccatttat |
5117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 5278 - 5240
Alignment:
| Q |
194 |
tgagtatgaattgtaacatagttttaattgtatttttat |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5278 |
tgagtatgaattgtaacatagttttaattgtatttttat |
5240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 49602501 - 49602456
Alignment:
| Q |
270 |
taatcctcaaacattttatgaatgtgaaagtatataattaggtcca |
315 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||| |||||| |
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|
| T |
49602501 |
taatcctcaaacacttgatgaatgtgaaagtatacaattgggtcca |
49602456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 22329504 - 22329460
Alignment:
| Q |
270 |
taatcctcaaacattttatgaatgtgaaagtatataattaggtcc |
314 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||| ||||| |
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|
| T |
22329504 |
taatcctcaaacacttgatgaatgtgaaagtatacaattgggtcc |
22329460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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