View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_94 (Length: 350)

Name: NF0812_low_94
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_94
NF0812_low_94
[»] chr7 (1 HSPs)
chr7 (142-250)||(42446571-42446679)
[»] chr4 (8 HSPs)
chr4 (142-250)||(9593511-9593619)
chr4 (188-250)||(9602359-9602421)
chr4 (150-194)||(9571960-9572004)
chr4 (150-250)||(37898145-37898245)
chr4 (209-250)||(9569426-9569467)
chr4 (209-250)||(9581786-9581826)
chr4 (209-250)||(9587481-9587521)
chr4 (142-218)||(9569616-9569692)
[»] scaffold0054 (2 HSPs)
scaffold0054 (150-250)||(39561-39662)
scaffold0054 (164-250)||(33225-33311)
[»] chr6 (8 HSPs)
chr6 (167-252)||(29124380-29124465)
chr6 (142-250)||(25319060-25319168)
chr6 (142-250)||(26148753-26148861)
chr6 (168-250)||(29145530-29145612)
chr6 (167-252)||(32744622-32744706)
chr6 (210-254)||(29137512-29137556)
chr6 (211-248)||(34278253-34278289)
chr6 (190-238)||(32740515-32740563)
[»] chr1 (1 HSPs)
chr1 (87-140)||(26684116-26684169)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 42446679 - 42446571
Alignment:
Q  142 ctttgtatacaaggtaacattccaataaccacattcatatacctcttggtgaaaacaagaaaaacagctaattacttattcctccaaatggaagaatgct 241  Q
    ||||||||||||||||| ||  ||| ||||||| ||||||||||||||||||||||||||||||||  |||||| |||||||||||| |||||||||| |    
T  42446679 ctttgtatacaaggtaatatctcaagaaccacaatcatatacctcttggtgaaaacaagaaaaacaattaattaattattcctccaattggaagaatgtt 42446580  T
Q  242 ttccttgta 250  Q
    |||||||||    
T  42446579 ttccttgta 42446571  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 9593511 - 9593619
Alignment:
Q  142 ctttgtatacaaggtaacattccaataaccacattcatatacctcttggtgaaaacaagaaaaacagctaattacttattcctccaaatggaagaatgct 241  Q
    ||||| ||||||||||| |||||||| |||||  |||| |  ||| ||||||||||||| |||| | |||||||||||||||||||| |||||||||| |    
T  9593511 ctttgcatacaaggtaatattccaatcaccacgatcattttgctcctggtgaaaacaaggaaaataactaattacttattcctccaattggaagaatgtt 9593610  T
Q  242 ttccttgta 250  Q
    |||||||||    
T  9593611 ttccttgta 9593619  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 9602359 - 9602421
Alignment:
Q  188 tggtgaaaacaagaaaaacagctaattacttattcctccaaatggaagaatgctttccttgta 250  Q
    |||||||||||||||||| | |||||||||||||||||| | |||||||||| ||||||||||    
T  9602359 tggtgaaaacaagaaaaataactaattacttattcctccgattggaagaatgttttccttgta 9602421  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 9572004 - 9571960
Alignment:
Q  150 acaaggtaacattccaataaccacattcatatacctcttggtgaa 194  Q
    ||||||||| || |||||||||||||||| |||||||||||||||    
T  9572004 acaaggtaatatcccaataaccacattcacatacctcttggtgaa 9571960  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 37898245 - 37898145
Alignment:
Q  150 acaaggtaacattccaataaccacattcatatacctcttggtgaaaacaagaaaaacagctaattacttattcctccaaatggaagaatgctttccttgt 249  Q
    |||||| || || |||||||||||| |||  |||||||||||||||||||||| | |   |||||||||  |||||||| || ||||||| ||||| |||    
T  37898245 acaaggcaatatcccaataaccacaatcaattacctcttggtgaaaacaagaatagccattaattacttgctcctccaactgtaagaatgttttccatgt 37898146  T
Q  250 a 250  Q
    |    
T  37898145 a 37898145  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 9569467 - 9569426
Alignment:
Q  209 ctaattacttattcctccaaatggaagaatgctttccttgta 250  Q
    |||||||||||||||||||| |||||||||  ||||||||||    
T  9569467 ctaattacttattcctccaattggaagaatattttccttgta 9569426  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 9581786 - 9581826
Alignment:
Q  209 ctaattacttattcctccaaatggaagaatgctttccttgta 250  Q
    |||||||||||||||||||| |||||||||| ||||||||||    
T  9581786 ctaattacttattcctccaattggaagaatg-tttccttgta 9581826  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 9587481 - 9587521
Alignment:
Q  209 ctaattacttattcctccaaatggaagaatgctttccttgta 250  Q
    |||||||||||||||||||| |||||||||| ||||||||||    
T  9587481 ctaattacttattcctccaattggaagaatg-tttccttgta 9587521  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 9569692 - 9569616
Alignment:
Q  142 ctttgtatacaaggtaacattccaataaccacattcatatacctcttggtgaaaacaagaaaaacagctaattactt 218  Q
    ||||| ||||||||||| || ||||| |||||| |||| |  ||| | |||||||||||||||| | ||||||||||    
T  9569692 ctttgcatacaaggtaatatcccaatcaccacaatcattttgctcctcgtgaaaacaagaaaaataactaattactt 9569616  T

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Target: scaffold0054 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 39561 - 39662
Alignment:
Q  150 acaaggtaacattc-caataaccacattcatatacctcttggtgaaaacaagaaaaacagctaattacttattcctccaaatggaagaatgctttccttg 248  Q
    ||||||||| |||| ||||||||||  |||||||||||||||||||||||||||||| |  ||||||||||||||| ||| |  ||||||| ||||||||    
T  39561 acaaggtaatattctcaataaccacgatcatatacctcttggtgaaaacaagaaaaataattaattacttattccttcaattacaagaatgttttccttg 39660  T
Q  249 ta 250  Q
    ||    
T  39661 ta 39662  T

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Target: scaffold0054; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 33225 - 33311
Alignment:
Q  164 caataaccacattcatatacctcttggtgaaaacaagaaaaacagctaattacttattcctccaaatggaagaatgctttccttgta 250  Q
    ||||||||||| ||||||||||||||||||||||| |||||| |  ||||||||||||||| |||  | ||||||| ||||||||||    
T  33225 caataaccacaatcatatacctcttggtgaaaacatgaaaaataattaattacttattccttcaatggcaagaatgttttccttgta 33311  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 29124465 - 29124380
Alignment:
Q  167 taaccacattcatatacctcttggtgaaaacaagaaaaacagctaattacttattcctccaaatggaagaatgctttccttgtaaa 252  Q
    |||||||| ||||||| || ||||| |||||| |||||| || |||||| |||||||| |||||||||||||||||||||||||||    
T  29124465 taaccacaatcatatatctgttggtaaaaacaggaaaaaaaggtaattatttattccttcaaatggaagaatgctttccttgtaaa 29124380  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 25319060 - 25319168
Alignment:
Q  142 ctttgtatacaaggtaacattccaataaccacattcatatacctcttggtgaaaacaagaaaaacagctaattacttattcctccaaatggaagaatgct 241  Q
    ||||||||| ||||||| |||| || ||| | ||||||||||||||||||||| |||||||||||| ||| ||||| |||||||||| | |||||| |      
T  25319060 ctttgtatataaggtaatattcaaaaaacgaaattcatatacctcttggtgaagacaagaaaaacaactagttactgattcctccaagtagaagaaagac 25319159  T
Q  242 ttccttgta 250  Q
    |||||||||    
T  25319160 ttccttgta 25319168  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 26148753 - 26148861
Alignment:
Q  142 ctttgtatacaaggtaacattccaataaccacattcatatacctcttggtgaaaacaagaaaaacagctaattacttattcctccaaatggaagaatgct 241  Q
    ||||||||| ||||||| |||| || ||| | ||||||||||||||||||||| |||||||||||| ||| ||||| |||||||||| | |||||| |      
T  26148753 ctttgtatataaggtaatattcaaaaaacgaaattcatatacctcttggtgaagacaagaaaaacaactagttactgattcctccaagtagaagaaagac 26148852  T
Q  242 ttccttgta 250  Q
    |||||||||    
T  26148853 ttccttgta 26148861  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 29145612 - 29145530
Alignment:
Q  168 aaccacattcatatacctcttggtgaaaacaagaaaaacagctaattacttattcctccaaatggaagaatgctttccttgta 250  Q
    ||||||| |||||||||||||||||| |||||||||||||  ||  |||||  |||||||| ||||||||||  |||||||||    
T  29145612 aaccacaatcatatacctcttggtgataacaagaaaaacaattagctacttgctcctccaattggaagaatgtattccttgta 29145530  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 32744622 - 32744706
Alignment:
Q  167 taaccacattcatatacctcttggtgaaaacaagaaaaacagctaattacttattcctccaaatggaagaatgctttccttgtaaa 252  Q
    ||||||||| |||||| || |||||||||| | ||| ||||  |||| | |||||||| |||||||||||||||||||||||||||    
T  32744622 taaccacat-catatatctgttggtgaaaataggaacaacaattaatcatttattccttcaaatggaagaatgctttccttgtaaa 32744706  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 29137556 - 29137512
Alignment:
Q  210 taattacttattcctccaaatggaagaatgctttccttgtaaact 254  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||    
T  29137556 taattatttaatcctccaaatggaagaatggtttccttgtaaact 29137512  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 34278253 - 34278289
Alignment:
Q  211 aattacttattcctccaaatggaagaatgctttccttg 248  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  34278253 aattacttattcctc-aaatggaagaatgctttccttg 34278289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 32740515 - 32740563
Alignment:
Q  190 gtgaaaacaagaaaaacagctaattacttattcctccaaatggaagaat 238  Q
    |||||||||||||||| | |||||||||| ||||||||| | |||||||    
T  32740515 gtgaaaacaagaaaaaaaactaattacttgttcctccaatttgaagaat 32740563  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 26684116 - 26684169
Alignment:
Q  87 aacacacaaaacacacctctgaaacacagaatactactttggaagatgaaaatc 140  Q
    ||||||||||||||| |  ||||||||||||| |||| || |||||||||||||    
T  26684116 aacacacaaaacacatcattgaaacacagaatcctaccttagaagatgaaaatc 26684169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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