View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_95 (Length: 350)
Name: NF0812_low_95
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_95 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 46 - 261
Target Start/End: Original strand, 37997471 - 37997695
Alignment:
| Q |
46 |
atgttacaaaataattgcattttatttc-tatgtcttggtcacactctgta----attgtacaaatgtcattcttgcaagatcatttctatgcccattat |
140 |
Q |
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| T |
37997471 |
atgttacaaaataattgccttttatttcatatgtctaggttacactttgtacataattgtacaaaggtaattcttgcaagatcatttctctcatcaatct |
37997570 |
T |
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| Q |
141 |
tcttttccctataaaagttgttatcaaaga--tgaaatggagcacgccttttcctctttta--tatttttagggactcttttaatgtttagttgtatgct |
236 |
Q |
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| T |
37997571 |
tctttccgctataaaagttgttataaaaaaactgaaagggagcaccccttttctggttttatgtctttttatgaacccttttaatgttttattgtgtgct |
37997670 |
T |
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| Q |
237 |
tactttaagtgccaacatttaaaga |
261 |
Q |
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| T |
37997671 |
tactttgagtgccaacctttcaaga |
37997695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 294
Target Start/End: Complemental strand, 24974531 - 24974355
Alignment:
| Q |
113 |
cttgcaagatcatttctatgcccattattcttttccctataaaagttgttatcaaagatgaaatggagcacgccttttcctcttttatatttttagggac |
212 |
Q |
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| T |
24974531 |
cttgcaagatcatttctttgctcattcttctttcccctataacagttgttatcagagatgaaatgaagcacccctttcctgctt-----tctttagggac |
24974437 |
T |
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| Q |
213 |
tcttttaatgtttagttgtatgcttactttaagtgccaacatttaaagannnnnnncaacctttcaattctacaatgataaa |
294 |
Q |
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| T |
24974436 |
ccttttaatgttttattatgtgcttactttgagtgccaacctttcaagattcgtctaaacctttcaattccacaatgataaa |
24974355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 6832039 - 6831974
Alignment:
| Q |
287 |
atgataaataacggttaagtactaaaact--acaacaaaagcaatgaatgaataaaattgttgata |
350 |
Q |
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| T |
6832039 |
atgataaataacggttaagtactaaaactgaacaacaaaagcaatgaatgaataaaattgtggata |
6831974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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