View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_96 (Length: 346)

Name: NF0812_low_96
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_96
NF0812_low_96
[»] chr1 (9 HSPs)
chr1 (48-257)||(7101359-7101568)
chr1 (148-262)||(24241474-24241585)
chr1 (149-262)||(16253026-16253136)
chr1 (148-262)||(21356790-21356901)
chr1 (146-262)||(39744169-39744282)
chr1 (148-252)||(34773429-34773532)
chr1 (148-253)||(2344965-2345068)
chr1 (271-317)||(7101292-7101340)
chr1 (161-262)||(41942790-41942888)
[»] chr5 (10 HSPs)
chr5 (148-311)||(10719742-10719905)
chr5 (148-262)||(2976446-2976555)
chr5 (147-307)||(20524557-20524716)
chr5 (148-257)||(8026463-8026574)
chr5 (148-262)||(33758790-33758901)
chr5 (147-311)||(34849437-34849600)
chr5 (171-256)||(23151436-23151518)
chr5 (162-253)||(30319817-30319906)
chr5 (145-232)||(36442077-36442160)
chr5 (172-262)||(37872201-37872291)
[»] chr2 (10 HSPs)
chr2 (161-307)||(30706104-30706250)
chr2 (148-310)||(3870020-3870185)
chr2 (148-262)||(11028775-11028887)
chr2 (147-262)||(6512079-6512196)
chr2 (200-307)||(4848143-4848248)
chr2 (152-248)||(36400857-36400952)
chr2 (147-262)||(37721444-37721557)
chr2 (148-311)||(38879513-38879673)
chr2 (148-241)||(29685491-29685582)
chr2 (148-262)||(28734070-28734181)
[»] chr3 (10 HSPs)
chr3 (149-311)||(47169243-47169409)
chr3 (152-262)||(1994850-1994957)
chr3 (147-262)||(22220205-22220318)
chr3 (216-307)||(39170931-39171021)
chr3 (148-262)||(2008395-2008508)
chr3 (169-262)||(39056875-39056964)
chr3 (147-228)||(45805568-45805645)
chr3 (204-262)||(28297723-28297782)
chr3 (274-310)||(14785046-14785082)
chr3 (274-310)||(25199064-25199100)
[»] chr7 (8 HSPs)
chr7 (163-311)||(46023139-46023287)
chr7 (151-311)||(30783434-30783589)
chr7 (149-241)||(39187980-39188068)
chr7 (148-262)||(34998524-34998637)
chr7 (149-311)||(45627362-45627527)
chr7 (147-307)||(8541426-8541583)
chr7 (216-311)||(15878700-15878796)
chr7 (148-262)||(10544987-10545100)
[»] chr4 (7 HSPs)
chr4 (151-310)||(17056614-17056770)
chr4 (147-311)||(20679790-20679956)
chr4 (160-262)||(47833503-47833603)
chr4 (151-306)||(39503459-39503616)
chr4 (169-262)||(36364868-36364954)
chr4 (196-252)||(47541819-47541876)
chr4 (152-262)||(46550706-46550813)
[»] scaffold1339 (1 HSPs)
scaffold1339 (147-262)||(57-170)
[»] chr6 (2 HSPs)
chr6 (148-262)||(7080149-7080262)
chr6 (161-202)||(994874-994915)
[»] scaffold0830 (1 HSPs)
scaffold0830 (177-262)||(5379-5462)
[»] chr8 (8 HSPs)
chr8 (148-262)||(30208195-30208307)
chr8 (147-262)||(40719895-40720010)
chr8 (152-262)||(42056680-42056787)
chr8 (143-255)||(36132667-36132776)
chr8 (148-252)||(35179156-35179258)
chr8 (164-235)||(31333190-31333258)
chr8 (152-250)||(39402038-39402136)
chr8 (153-210)||(6048653-6048710)
[»] scaffold0095 (1 HSPs)
scaffold0095 (152-250)||(35366-35464)
[»] scaffold0009 (1 HSPs)
scaffold0009 (148-241)||(25684-25773)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 48 - 257
Target Start/End: Complemental strand, 7101568 - 7101359
Alignment:
Q  48 aatgtaatcaccaatatttcttttgaaacagtcaaaacaataaataatactattaaataacagaaaaattgtttgaaacaaagttaagaaagtaattttt 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7101568 aatgtaatcaccaatatttcttttgaaacagtcaaaacaataaataatactattaaataacagaaaaattgtttgaaacaaagttaagaaagtaattttt 7101469  T
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaat 247  Q
    |||||||||||| ||| |||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7101468 gaggtattctcccatgatcataagaccaaatcaatagtgttggaacatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaat 7101369  T
Q  248 ttcctcttta 257  Q
    ||||||||||    
T  7101368 ttcctcttta 7101359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 24241474 - 24241585
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 246  Q
    |||||||||| | ||||||| | ||||||||||||| |||||||    ||||||||||||||||||  |||| ||||||||||||||| | |||||||||    
T  24241474 gaggtattcttccatggtcacatgaccaaatcaataatgtttgg----acacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaa 24241569  T
Q  247 tttcctctttactatt 262  Q
    ||||||| ||| ||||    
T  24241570 tttcctccttattatt 24241585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 16253026 - 16253136
Alignment:
Q  149 aggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaat 247  Q
    ||||||||| | ||| ||| ||||||||||||||| |||||||    | ||||||||||||||||  |||| ||||||||||||||| | ||||||||||    
T  16253026 aggtattcttccatgttcacaagaccaaatcaataatgtttgg----agacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaat 16253121  T
Q  248 ttcctctttactatt 262  Q
    |||||| ||| ||||    
T  16253122 ttcctccttattatt 16253136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 21356790 - 21356901
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 246  Q
    ||||||||||  |||||||| ||||||||||||||| |||||||    ||||||| ||||||||||  || | ||||||||||||||| | |||||||||    
T  21356790 gaggtattcttttatggtcacaagaccaaatcaataatgtttgg----acacacatataaaaagattctcttcaaaatattcaatcatcttttttatcaa 21356885  T
Q  247 tttcctctttactatt 262  Q
    ||| ||| ||| ||||    
T  21356886 ttttctcattattatt 21356901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 39744282 - 39744169
Alignment:
Q  146 ttgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca-ttcttttatc 244  Q
    |||||||||||| ||||||||| ||||||||||||||| |||||||    ||||||| ||||||||||  | || | |||| ||||||| || |||||||    
T  39744282 ttgaggtattcttctatggtcacaagaccaaatcaataatgtttgg----acacacatataaaaagattcttctcagaatagtcaatcattttttttatc 39744187  T
Q  245 aatttcctctttactatt 262  Q
    | ||||||| ||| ||||    
T  39744186 attttcctccttattatt 39744169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 252
Target Start/End: Complemental strand, 34773532 - 34773429
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 246  Q
    |||||||||| | ||| ||| |||||||| |||||| ||||||  ||||||||||  |||||||||  |||| ||||||||||||||| | |||||| ||    
T  34773532 gaggtattcttccatgatcacaagaccaactcaataatgtttgcacatacacaca--taaaaagattctcctcaaaatattcaatcatattttttattaa 34773435  T
Q  247 tttcct 252  Q
    ||||||    
T  34773434 tttcct 34773429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 253
Target Start/End: Original strand, 2344965 - 2345068
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 246  Q
    |||||||||| |  |||||| ||||||||||||||| |||||||  |||  |||||||||||| ||  || |||||| |||||||||| | |||||||||    
T  2344965 gaggtattcttccttggtcacaagaccaaatcaataatgtttgg--ataagcacacataaaaa-attttctttaaaaaattcaatcatcttttttatcaa 2345061  T
Q  247 tttcctc 253  Q
    |||||||    
T  2345062 tttcctc 2345068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 7101340 - 7101292
Alignment:
Q  271 tatttctttat--gtgtgtgaccaaacactttttatttggtcacataac 317  Q
    |||||||||||  |||||||||||||||||||||||||| |||| ||||    
T  7101340 tatttctttatatgtgtgtgaccaaacactttttatttgatcacgtaac 7101292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 262
Target Start/End: Original strand, 41942790 - 41942888
Alignment:
Q  161 atggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttcctctttact 259  Q
    ||||||| ||||||||||||||| |||||||    ||||| ||||||||||||  || |  ||||||||||||||   |||||||||||||||| ||| |    
T  41942790 atggtcacaagaccaaatcaataatgtttgg----acacatacataaaaagattctcttcgaaatattcaatcatcatttttatcaatttcctccttatt 41942885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 148 - 311
Target Start/End: Original strand, 10719742 - 10719905
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatca 245  Q
    |||||||||| | |||||||||||||||||| ||||||||||||    ||||||||||||||| |||||||||||||||||||||||  || ||||||||    
T  10719742 gaggtattcttccatggtcataagaccaaattaatagtgtttgg----acacacacataaaaaaatggtccttaaaatattcaatcatttttttttatca 10719837  T
Q  246 atttcctctttactattnnnnnnnntatttctttatgtg--tgtgaccaaacactttttatttggtca 311  Q
    |||| ||||||||||||        ||||||||||||||  |||||||||||||||||||||||||||    
T  10719838 attttctctttactattaaaaaaaatatttctttatgtgtttgtgaccaaacactttttatttggtca 10719905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 148 - 262
Target Start/End: Complemental strand, 2976555 - 2976446
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca-ttcttttatcaa 246  Q
    |||||||||| | |||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||| || |||||||||    
T  2976555 gaggtattcttccatggtcataagaccaaatcaatagtgtttgg------acacacataaaaagatggtccttaaaatattcaatcattttttttatcaa 2976462  T
Q  247 tttcctctttactatt 262  Q
    |||| |||||| ||||    
T  2976461 tttcttctttaatatt 2976446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 147 - 307
Target Start/End: Complemental strand, 20524716 - 20524557
Alignment:
Q  147 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca-ttcttttatca 245  Q
    ||||||||||| | ||| ||| || || ||||||||| |||||||    |||||||||| |||||||| |  |||||||||||||||| || ||||||||    
T  20524716 tgaggtattcttccatgatcacaaaactaaatcaatactgtttgg----acacacacatcaaaagatgatgtttaaaatattcaatcattttttttatca 20524621  T
Q  246 atttcctctttactattnnnnnnnntatttcttta--tgtgtgtgaccaaacactttttatttg 307  Q
    |||||||||||| ||||        ||||||||||  |||||||||||||||||||||||||||    
T  20524620 atttcctctttattattaaaaaaaatatttctttatgtgtgtgtgaccaaacactttttatttg 20524557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 257
Target Start/End: Original strand, 8026463 - 8026574
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttt----tat 243  Q
    |||||||||| |||| |||| ||||||||||||||| ||||||| |   || |||||||||||||||||| |||||||||||||||||| |||    |||    
T  8026463 gaggtattcttctatagtcacaagaccaaatcaatactgtttggacg--catacacataaaaagatggtctttaaaatattcaatcatttttttttatat 8026560  T
Q  244 caatttcctcttta 257  Q
    ||||||||||||||    
T  8026561 caatttcctcttta 8026574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 33758790 - 33758901
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 246  Q
    |||||||||| | ||||||| |||| |||||||||| |||||||    ||||||||||||||||||  |||| ||| ||||||||||| | |||||||||    
T  33758790 gaggtattcttccatggtcacaagatcaaatcaatactgtttgg----acacacacataaaaagattctcctcaaactattcaatcatcttttttatcaa 33758885  T
Q  247 tttcctctttactatt 262  Q
    |||||| |||| ||||    
T  33758886 tttcctttttattatt 33758901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 311
Target Start/End: Original strand, 34849437 - 34849600
Alignment:
Q  147 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatc 244  Q
    ||||||||| |  |||||||||||||| ||||||||| ||||| |    ||||||| ||||||||||  |||| ||||||||||||||  || |||||||    
T  34849437 tgaggtatttttttatggtcataagacgaaatcaataatgtttcg----acacacatataaaaagattctcctcaaaatattcaatcatctttttttatc 34849532  T
Q  245 aatttcctctttactatt-nnnnnnnntatttctttatgtgtgtgaccaaacactttttatttggtca 311  Q
    ||||| ||| ||| ||||         || || |||| ||||||||||||||||||||| ||||||||    
T  34849533 aattttctccttattattaaaaaaaaatacttttttacgtgtgtgaccaaacactttttctttggtca 34849600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 23151518 - 23151436
Alignment:
Q  171 gaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttcctcttt 256  Q
    ||||||||||||| |||||||    ||||||||||||||||||  |||| |||||||||||||||   ||||||||||||| |||||    
T  23151518 gaccaaatcaataatgtttgg----acacacacataaaaagattctcctcaaaatattcaatcatcatttttatcaatttcttcttt 23151436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 253
Target Start/End: Original strand, 30319817 - 30319906
Alignment:
Q  162 tggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttcctc 253  Q
    |||||| ||||||||||||||| |||||||  |||| | |||||||||| ||  || ||||||||||||||||| | ||||||||||||||||    
T  30319817 tggtcacaagaccaaatcaataatgtttgg--atacgcgcacataaaaa-attctctttaaaatattcaatcatcttttttatcaatttcctc 30319906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 36442077 - 36442160
Alignment:
Q  145 tttgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaat 232  Q
    ||||||| ||||| | ||| ||| |||||||||||||||||| |||| |||| || |    |||||||||||| ||||||||||||||    
T  36442077 tttgagggattcttccatgctcacaagaccaaatcaatagtgattggacataaacgc----aaaaagatggtctttaaaatattcaat 36442160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 262
Target Start/End: Complemental strand, 37872291 - 37872201
Alignment:
Q  172 accaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatcaatttcctctttactatt 262  Q
    |||||||||||| | ||||| ||  |||||||||||||||||  || | ||||||||||||||  || |||||||||||||||| ||| ||||    
T  37872291 accaaatcaataatatttggaca--cacacacataaaaagattctcatcaaaatattcaatcatctttttttatcaatttcctccttattatt 37872201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 161 - 307
Target Start/End: Complemental strand, 30706250 - 30706104
Alignment:
Q  161 atggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca------ttcttttatcaatttcctct 254  Q
    ||||||| |||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||      || |||||||||||||||||    
T  30706250 atggtcacaagaccaaatcaatagtgtttgg------acacacataaaaagatggtccttaaaatattcaatcatttttttttttttatcaatttcctct 30706157  T
Q  255 ttactattnnnnnnnntatttctttatgtgtgtgaccaaacactttttatttg 307  Q
    ||||||||        ||||||||| |||||||||||||||||||||||||||    
T  30706156 ttactattaaaaaaaatatttctttgtgtgtgtgaccaaacactttttatttg 30706104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 148 - 310
Target Start/End: Original strand, 3870020 - 3870185
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 246  Q
    |||||||||| | ||||||| ||||||||||||||| ||||| | || ||||| ||||||||||||  |||| ||||||||||||||| | |||||||||    
T  3870020 gaggtattcttccatggtcacaagaccaaatcaataatgttttgacacacacagacataaaaagattctcctcaaaatattcaatcatcttttttatcaa 3870119  T
Q  247 tttcctctttactatt--nnnnnnnntatttctttatgtgtgtgaccaaacactttttatttggtc 310  Q
    ||||||| ||| ||||          || ||||||||||||||||||||||||||||| |||||||    
T  3870120 tttcctccttattattaaaaaaaaaatacttctttatgtgtgtgaccaaacactttttctttggtc 3870185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 11028775 - 11028887
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatca 245  Q
    |||||||||| | || |||| ||||||||||||||| |||||||    ||||||||||||||||||  |||||||||||||||||||  || ||||||||    
T  11028775 gaggtattcttccatcgtcaaaagaccaaatcaataatgtttgg----acacacacataaaaagattctccttaaaatattcaatcatctttttttatca 11028870  T
Q  246 atttcctctttactatt 262  Q
    |||||||| ||| ||||    
T  11028871 atttcctccttattatt 11028887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 6512196 - 6512079
Alignment:
Q  147 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca----ttctttta 242  Q
    ||||||||| | | ||||||| |||||||||||||||||||||||  | |||||||||||||||||||  |  |||||||||||||||    || |||||    
T  6512196 tgaggtattattccatggtcacaagaccaaatcaatagtgtttgg--acacacacacataaaaagatgaactctaaaatattcaatcattttttttttta 6512099  T
Q  243 tcaatttcctctttactatt 262  Q
    ||||||||||||||| ||||    
T  6512098 tcaatttcctctttattatt 6512079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 4848248 - 4848143
Alignment:
Q  200 acacataaaaagatggtccttaaaatattcaatcattcttttatcaatttcctctttactattnnnnnnnntatttctttatgtgtgtgaccaaacactt 299  Q
    |||||| |||||||| || |||||||||||||||||| ||||||| ||||||| |||| ||||        ||||| |||||||||| |||||| |||||    
T  4848248 acacatgaaaagatgatcattaaaatattcaatcatttttttatccatttcctttttattatt--aaaaaatatttttttatgtgtgggaccaaccactt 4848151  T
Q  300 tttatttg 307  Q
    ||||||||    
T  4848150 tttatttg 4848143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 36400857 - 36400952
Alignment:
Q  152 tattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatt 248  Q
    |||||| | ||||||  ||||||||||||||| ||||||  ||  |||||||||||||||||  |||| ||||||||||||||| | |||||||||||    
T  36400857 tattcttccatggtctcaagaccaaatcaataatgtttgaaca--cacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatt 36400952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 37721444 - 37721557
Alignment:
Q  147 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatc 244  Q
    ||||||||||| | ||||||| ||||||||||||||| | |||||    |||| | |||||||||||  || | ||||||||||||||  || |||||||    
T  37721444 tgaggtattcttccatggtcacaagaccaaatcaataatatttgg----acacgcgcataaaaagattctcttcaaaatattcaatcatttttttttatc 37721539  T
Q  245 aatttcctctttactatt 262  Q
    ||||||||| ||| ||||    
T  37721540 aatttcctccttattatt 37721557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 311
Target Start/End: Original strand, 38879513 - 38879673
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatca 245  Q
    |||||||||| | || |||| |||||||||| |||| |||||||    ||||||||||||||||||  |||| |||||||| |||||  || ||||||||    
T  38879513 gaggtattcttccatagtcacaagaccaaattaataatgtttgg----acacacacataaaaagattctcctcaaaatattaaatcatctttttttatca 38879608  T
Q  246 atttcctctttactattnnnnnnnntatttctttatgtgtgtgaccaaacactttttatttggtca 311  Q
    |||| ||| | | ||||        || |||||||||||| |||||||||| ||||| ||||||||    
T  38879609 attttctcctcattatt-aaaaaaatacttctttatgtgtatgaccaaacattttttctttggtca 38879673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 241
Target Start/End: Complemental strand, 29685582 - 29685491
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattctttt 241  Q
    |||||||||| | ||||||| | |||||||  || |||||||||||  ||||||||||||||| ||  |||| |||||||||||| ||| ||||    
T  29685582 gaggtattcttccatggtcacatgaccaaagaaaaagtgtttggtc--acacacacataaaaaaattctcctcaaaatattcaataattttttt 29685491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 262
Target Start/End: Complemental strand, 28734181 - 28734070
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatca 245  Q
    |||||||||| | | ||||| ||||||||||||||| |||||||    ||||||||||||||| ||  |||| |||||| ||| |||  || ||||||||    
T  28734181 gaggtattcttccacggtcacaagaccaaatcaataatgtttgg----acacacacataaaaa-attctcctcaaaatactcactcatctttttttatca 28734087  T
Q  246 atttcctctttactatt 262  Q
    ||||| |||||| ||||    
T  28734086 atttcttctttattatt 28734070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 149 - 311
Target Start/End: Original strand, 47169243 - 47169409
Alignment:
Q  149 aggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca-------ttctttt 241  Q
    |||||||||  ||| ||||||||||||||||||||||||||||  | ||||||||||||||||| ||||| |||||||||||||||       || ||||    
T  47169243 aggtattcttttatagtcataagaccaaatcaatagtgtttgg--acacacacacataaaaagagggtccataaaatattcaatcatttttttttttttt 47169340  T
Q  242 atcaatttcctctttactattnnnnnnnntatttctttatgtgtgtgaccaaacactttttatttggtca 311  Q
    |||||||||||||||| ||||        |||||||||||||||||||| ||||||||||||||||||||    
T  47169341 atcaatttcctctttattatt-aaaaaattatttctttatgtgtgtgactaaacactttttatttggtca 47169409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 262
Target Start/End: Complemental strand, 1994957 - 1994850
Alignment:
Q  152 tattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttc 250  Q
    |||||| ||||||||| ||||||||||||||| |||||||    ||| ||||| ||||||||  |||| ||||||||||||||| | ||||||||||| |    
T  1994957 tattctactatggtcacaagaccaaatcaataatgtttgg----acaaacacacaaaaagattctcctgaaaatattcaatcatcttttttatcaattac 1994862  T
Q  251 ctctttactatt 262  Q
    ||||||| ||||    
T  1994861 ctctttattatt 1994850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 22220205 - 22220318
Alignment:
Q  147 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatc 244  Q
    ||||||||||| | ||||||| |||| |||||||||| ||||||    |||||||||||||||||||  | || ||||||||||||||  || |||||||    
T  22220205 tgaggtattcttccatggtcaaaagatcaaatcaataatgtttg----tacacacacataaaaagattcttctcaaaatattcaatcatctttttttatc 22220300  T
Q  245 aatttcctctttactatt 262  Q
    ||||||||| ||| ||||    
T  22220301 aatttcctccttattatt 22220318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 307
Target Start/End: Complemental strand, 39171021 - 39170931
Alignment:
Q  216 tccttaaaatattcaatcattcttttatcaatttcctctttactattnnnnnnnntatttctttatgtgtgtgaccaaacactttttatttg 307  Q
    ||||||||||| ||||||||| |||||||||||| || |||| ||||        |||||||||||||||||||||||||| | ||||||||    
T  39171021 tccttaaaatactcaatcattattttatcaattttctttttattattaaataaa-tatttctttatgtgtgtgaccaaacattatttatttg 39170931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 2008395 - 2008508
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 246  Q
    |||| ||||| | ||| ||| ||||||||||||||| | ||||| ||  |||||| ||||||||||  |||| ||||||||||||||| | |||||||||    
T  2008395 gaggcattcttccatgatcacaagaccaaatcaataatatttggaca--cacacatataaaaagattctcctcaaaatattcaatcatcttttttatcaa 2008492  T
Q  247 tttcctctttactatt 262  Q
    ||| ||| ||| ||||    
T  2008493 ttttctccttattatt 2008508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 262
Target Start/End: Complemental strand, 39056964 - 39056875
Alignment:
Q  169 aagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttcctctttactatt 262  Q
    ||||||||||| ||| |||||||    ||||||||||||||||||  |||| |||||||||||||||  ||||||| |||| ||| ||| ||||    
T  39056964 aagaccaaatctataatgtttgg----acacacacataaaaagattttcctcaaaatattcaatcatctttttatcgattttctccttaatatt 39056875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 45805645 - 45805568
Alignment:
Q  147 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatatt 228  Q
    ||||||||||| | ||| | | |||| |||||||||||||||||     |||||||||||||||||||||| ||||||||||    
T  45805645 tgaggtattcttccatgattacaagatcaaatcaatagtgtttgc----acacacacataaaaagatggtctttaaaatatt 45805568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 28297723 - 28297782
Alignment:
Q  204 ataaaaagatggtccttaaaatattcaatcatt-cttttatcaatttcctctttactatt 262  Q
    ||||||||||  ||||||| |||||| |||||| ||||||||||||||||||||| ||||    
T  28297723 ataaaaagattctccttaacatattcgatcatttcttttatcaatttcctctttattatt 28297782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 14785046 - 14785082
Alignment:
Q  274 ttctttatgtgtgtgaccaaacactttttatttggtc 310  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  14785046 ttctttatgtgtgtgtccaaacactatttatttggtc 14785082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 25199064 - 25199100
Alignment:
Q  274 ttctttatgtgtgtgaccaaacactttttatttggtc 310  Q
    |||||||| |||||||||||||||||||| |||||||    
T  25199064 ttctttatatgtgtgaccaaacactttttctttggtc 25199100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 311
Target Start/End: Original strand, 46023139 - 46023287
Alignment:
Q  163 ggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttcctctttactatt 262  Q
    ||||| ||||||||||||||| ||||||| ||  ||||||||||||||||||||  |||||||||||||||||| |||||||||||| || |||||||||    
T  46023139 ggtcacaagaccaaatcaatattgtttggaca--cacacacataaaaagatggtttttaaaatattcaatcatttttttatcaattttctttttactatt 46023236  T
Q  263 nnnnnnnntatttctttat--gtgtgtgaccaaacactttttatttggtca 311  Q
            |||||||||||  |||| |||||||||| ||||||||||||||    
T  46023237 aaaataaatatttctttatgcgtgtatgaccaaacattttttatttggtca 46023287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 311
Target Start/End: Complemental strand, 30783589 - 30783434
Alignment:
Q  151 gtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttc 250  Q
    ||||||| ||||||||| ||||| |||| ||||||||||||      ||||||||||||||||||| ||||||||||| ||| ||| |||||||||||||    
T  30783589 gtattcttctatggtcagaagactaaattaatagtgtttgg------acacacataaaaagatggttcttaaaatatttaattatttttttatcaatttc 30783496  T
Q  251 ctctttactattnnnnnnnntatttcttta--tgtgtgtgaccaaacactttttatttggtca 311  Q
    ||||||  ||||        ||||||||||  |||||||||||||||||||||||||||||||    
T  30783495 ctctttcttatt-aaaaaaatatttctttatgtgtgtgtgaccaaacactttttatttggtca 30783434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 39188068 - 39187980
Alignment:
Q  149 aggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattctttt 241  Q
    ||||||||| | ||||||| ||||||||||||||||| |||||    |||||| |||||||||||||||||||||||||||||||||| ||||    
T  39188068 aggtattcttccatggtcagaagaccaaatcaatagtatttgg----acacacgcataaaaagatggtccttaaaatattcaatcattttttt 39187980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 34998524 - 34998637
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcatt-cttttatcaa 246  Q
    |||||||||| | ||||||| ||||||||||||||| |||||||  | ||||||| ||||||||||  |||| ||||||||||||||||  |||||||||    
T  34998524 gaggtattcttccatggtcacaagaccaaatcaataatgtttgg--acacacacatataaaaagattctcctcaaaatattcaatcattatttttatcaa 34998621  T
Q  247 tttcctctttactatt 262  Q
    ||| ||| ||| ||||    
T  34998622 ttttctccttattatt 34998637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 311
Target Start/End: Complemental strand, 45627527 - 45627362
Alignment:
Q  149 aggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca-ttcttttatcaat 247  Q
    ||||||||| | ||||||| | ||||||||||||||||||| | || ||||||| | ||||| || |||||||||||||| ||||| || ||||||||||    
T  45627527 aggtattcttccatggtcacaggaccaaatcaatagtgttttgacacacacacata-aaaaaaattgtccttaaaatatttaatcattttttttatcaat 45627429  T
Q  248 ttcctctttactatt-nnnnnnnntatttcttta--tgtgtgtgaccaaacactttttatttggtca 311  Q
    ||||| | || ||||         ||||||||||  |||||||||||||||| ||||||||||||||    
T  45627428 ttcctttatattattaaaaaaaaatatttctttatgtgtgtgtgaccaaacagtttttatttggtca 45627362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 307
Target Start/End: Original strand, 8541426 - 8541583
Alignment:
Q  147 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat--tcttttatc 244  Q
    |||| ||||||  |||||||| ||||||||||||||| ||||||     |||||||| |||||||||  |||| |||||||||||||||  | |||||||    
T  8541426 tgagatattcttttatggtcacaagaccaaatcaataatgtttga----acacacacgtaaaaagattctcctcaaaatattcaatcattattttttatc 8541521  T
Q  245 aatttcctctttactattnnnnnnnntatttctttatgtgtgtgaccaaacactttttatttg 307  Q
    ||||||||| ||| ||||        || ||||||||||||||||||||||||| ||| ||||    
T  8541522 aatttcctccttattatt-aaaaaaatacttctttatgtgtgtgaccaaacactatttctttg 8541583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 311
Target Start/End: Complemental strand, 15878796 - 15878700
Alignment:
Q  216 tccttaaaatattcaatcattcttttatcaatttcctctttactattnnnnnnnntatttctttat--gtgtgtgaccaaacactttttatttggtca 311  Q
    ||||||||||||||||| ||| ||||||||||||  |||||| ||||        |||||||| ||  ||||||||||||||||||||||||||||||    
T  15878796 tccttaaaatattcaattattgttttatcaatttagtctttattattaaaaaaa-tatttcttgatttgtgtgtgaccaaacactttttatttggtca 15878700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 10544987 - 10545100
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattct---tttatc 244  Q
    |||||||||| | | | ||| |||||| |||||||||| |||||    | ||||||||||||||||  |  |||||||||||||||||| |   ||||||    
T  10544987 gaggtattcttccacgatcacaagaccgaatcaatagtatttgg----agacacacataaaaagattatttttaaaatattcaatcattttttatttatc 10545082  T
Q  245 aatttcctctttactatt 262  Q
    ||||||||||||| ||||    
T  10545083 aatttcctctttattatt 10545100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 151 - 310
Target Start/End: Original strand, 17056614 - 17056770
Alignment:
Q  151 gtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttc 250  Q
    ||||||| | ||||||| ||||||||||||||||||||||   ||||||||| ||||||| || |||||||||||||| ||||||| |||||||||||||    
T  17056614 gtattcttccatggtcacaagaccaaatcaatagtgtttga--atacacacatataaaaa-attgtccttaaaatatttaatcatttttttatcaatttc 17056710  T
Q  251 ctctttactattnnnnnnnntatttctttatgtgtg--tgaccaaacactttttatttggtc 310  Q
    ||||||| ||||        ||||||||||||||||  ||||||||||| ||||||||||||    
T  17056711 ctctttattatt-aaaaaaatatttctttatgtgtgtatgaccaaacac-ttttatttggtc 17056770  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 311
Target Start/End: Complemental strand, 20679956 - 20679790
Alignment:
Q  147 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca-ttcttttatca 245  Q
    |||||||||||   ||||||  |||| |||||||||||||||||| || ||||||| | ||||| |||||| |||||||||||||| | || ||||||||    
T  20679956 tgaggtattctttcatggtctcaagatcaaatcaatagtgtttggacacacacacata-aaaaaaatggtctttaaaatattcaattattttttttatca 20679858  T
Q  246 atttcctctttactattnnnnnnnntatttctttatg--tgtgtgaccaaacactttttatttggtca 311  Q
    |||||||||||| ||||        ||||||||||||  |||||||  ||||||||||||||| ||||    
T  20679857 atttcctctttattattaaaaaaaatatttctttatgtatgtgtgattaaacactttttatttcgtca 20679790  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 262
Target Start/End: Original strand, 47833503 - 47833603
Alignment:
Q  160 tatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttcctctttact 259  Q
    |||||||  ||||||||||| |||||| |||| |||||||  |||||||||||   |||| |||||||||||||||| |||||||||||||||||||| |    
T  47833503 tatggtcgcaagaccaaatctatagtggttggacatacac--acataaaaagaccatcctcaaaatattcaatcattattttatcaatttcctctttatt 47833600  T
Q  260 att 262  Q
    |||    
T  47833601 att 47833603  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 306
Target Start/End: Complemental strand, 39503616 - 39503459
Alignment:
Q  151 gtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaa---tcattcttttatcaat 247  Q
    ||||||| ||||||||| ||||| ||||||||||||||||   | ||| ||||||||||||||| || |||||||||| ||   |  || ||||||||||    
T  39503616 gtattcttctatggtcacaagactaaatcaatagtgtttg--aacacatacacataaaaagatgatctttaaaatatttaatttttttttttttatcaat 39503519  T
Q  248 ttcctctttactattnnnnnnnntatttcttta--tgtgtgtgaccaaacactttttattt 306  Q
    |||||||||| ||||        ||||||||||  ||||||||| ||||||||||||||||    
T  39503518 ttcctctttattatt-aaaaaaatatttctttatgtgtgtgtgatcaaacactttttattt 39503459  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 262
Target Start/End: Complemental strand, 36364954 - 36364868
Alignment:
Q  169 aagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttcctctttactatt 262  Q
    ||||||||||||||| |||||||    ||||||| ||||||| |||||||||||||||||| || ||  |||||||||||| ||||||||||||    
T  36364954 aagaccaaatcaataatgtttgg----acacacatataaaaatatggtccttaaaatattc-attat--ttttatcaattttctctttactatt 36364868  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 47541876 - 47541819
Alignment:
Q  196 acacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttcct 252  Q
    ||||||||||||||||||  |||| ||||||||||||||| | |||||||||||||||    
T  47541876 acacacacataaaaagattttcctcaaaatattcaatcatcttttttatcaatttcct 47541819  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 262
Target Start/End: Complemental strand, 46550813 - 46550706
Alignment:
Q  152 tattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttc 250  Q
    |||||| | ||||||| ||||||||||||||| |||||    | ||||| ||||||||||||  ||||  ||||||||||||||   ||||||||||||     
T  46550813 tattcttccatggtcacaagaccaaatcaataatgttt----aaacacatacataaaaagattctcctctaaatattcaatcatcatttttatcaatttt 46550718  T
Q  251 ctctttactatt 262  Q
    ||||||| ||||    
T  46550717 ctctttattatt 46550706  T

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Target: scaffold1339 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 170 - 57
Alignment:
Q  147 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaa 246  Q
    ||||||||||| | ||| ||| ||||||||||||||||||||||| ||  |||| |||||||||||| ||| | |||||||||||||||| |||||||||    
T  170 tgaggtattcttccatgatcacaagaccaaatcaatagtgtttggaca--cacatacataaaaagatagtcttaaaaatattcaatcatttttttatcaa 73  T
Q  247 tttcctctttactatt 262  Q
    |||| |||||| ||||    
T  72 tttcatctttattatt 57  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 7080149 - 7080262
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 246  Q
    |||||||||| ||||||||| | ||||||||||||| |||||||  | ||||||||||||||||||  || | |||||||||||| || | |||||||||    
T  7080149 gaggtattcttctatggtcacatgaccaaatcaataatgtttgg--acacacacacataaaaagattctcttcaaaatattcaataatcttttttatcaa 7080246  T
Q  247 tttcctctttactatt 262  Q
    |||| |||||| ||||    
T  7080247 tttcgtctttaatatt 7080262  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 994915 - 994874
Alignment:
Q  161 atggtcataagaccaaatcaatagtgtttggtcatacacaca 202  Q
    ||||||| |||||||||| ||||||||||||||| |||||||    
T  994915 atggtcacaagaccaaataaatagtgtttggtcacacacaca 994874  T

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Target: scaffold0830 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 5462 - 5379
Alignment:
Q  177 atcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttcctctttactatt 262  Q
    ||||||||||||||| ||  |||| |||||||||||| ||| | |||||||||||||||| ||||||||||||| |||||| ||||    
T  5462 atcaatagtgtttggaca--cacatacataaaaagatagtcttaaaaatattcaatcatttttttatcaatttcatctttattatt 5379  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 30208195 - 30208307
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 246  Q
    |||||||||| | ||||||||||||||||||||||| |||||||  | ||| | ||||||||||||  ||| | |||||||||||||| | |||||||||    
T  30208195 gaggtattcttccatggtcataagaccaaatcaataatgtttgg--acacatatacataaaaagattctcc-tcaaatattcaatcatcttttttatcaa 30208291  T
Q  247 tttcctctttactatt 262  Q
    ||||||| ||| ||||    
T  30208292 tttcctccttattatt 30208307  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 40720010 - 40719895
Alignment:
Q  147 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatc 244  Q
    ||||||||||| | ||||||| ||||  |||| |||| ||||||| ||  |||||||||||||||||  |||| ||||||||||||||  || |||||||    
T  40720010 tgaggtattcttccatggtcaaaagattaaattaataatgtttggaca--cacacacataaaaagattctcctcaaaatattcaatcatctttttttatc 40719913  T
Q  245 aatttcctctttactatt 262  Q
    ||||||||| ||| ||||    
T  40719912 aatttcctccttattatt 40719895  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 262
Target Start/End: Original strand, 42056680 - 42056787
Alignment:
Q  152 tattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttc 250  Q
    |||||| | ||||||| ||||||||||||||| |||||||    ||||| ||||||||||||  || ||||||||||||||||| | ||||||||||||     
T  42056680 tattcttccatggtcacaagaccaaatcaataatgtttgg----acacaaacataaaaagattctctttaaaatattcaatcatcttttttatcaatttt 42056775  T
Q  251 ctctttactatt 262  Q
    ||| ||| ||||    
T  42056776 ctccttattatt 42056787  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 143 - 255
Target Start/End: Original strand, 36132667 - 36132776
Alignment:
Q  143 tttttgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca-ttctttt 241  Q
    |||| |||||||||| |||| |||| ||||| |||| |||||| |||||    | |||||||||||||||||||  |||||||||| ||||| || ||||    
T  36132667 ttttagaggtattcttctatagtcacaagactaaattaatagtatttgg----atacacacataaaaagatggtttttaaaatatttaatcatttttttt 36132762  T
Q  242 atcaatttcctctt 255  Q
    || |||||||||||    
T  36132763 attaatttcctctt 36132776  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 252
Target Start/End: Original strand, 35179156 - 35179258
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatca 245  Q
    ||||||||||   ||||||||||||||||||||||| |||||||    ||||||| ||||||||||  | || |||||||||||| |  || ||||||||    
T  35179156 gaggtattctttcatggtcataagaccaaatcaataatgtttgg----acacacatataaaaagattcttctcaaaatattcaataatttttttttatca 35179251  T
Q  246 atttcct 252  Q
    |||||||    
T  35179252 atttcct 35179258  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 31333258 - 31333190
Alignment:
Q  164 gtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat 235  Q
    |||| ||||||||||||| | ||||||||  |||||||||||||||||||  | ||||||||||||||||||    
T  31333258 gtcacaagaccaaatcaaaa-tgtttggt--tacacacacataaaaagattttacttaaaatattcaatcat 31333190  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 39402136 - 39402038
Alignment:
Q  152 tattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatcaattt 249  Q
    |||||| | ||||||| ||||||||||||||| | ||||  |||||| |||  |||||||||  |||| ||||||||||||||  || ||||||||||||    
T  39402136 tattcttccatggtcacaagaccaaatcaataatatttgaacatacataca--taaaaagattctcctcaaaatattcaatcatctttttttatcaattt 39402039  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 6048710 - 6048653
Alignment:
Q  153 attctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaa 210  Q
    ||||| ||||||||| ||   ||||| ||||||||||||||| |||||||||||||||    
T  6048710 attcttctatggtcacaaacacaaatgaatagtgtttggtcacacacacacataaaaa 6048653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 35366 - 35464
Alignment:
Q  152 tattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatcaattt 249  Q
    |||||| | ||||||| ||||||||||||||| | ||||  |||||| |||  |||||||||  |||| ||||||||||||||  || ||||||||||||    
T  35366 tattcttccatggtcacaagaccaaatcaataatatttgaacatacataca--taaaaagattctcctcaaaatattcaatcatctttttttatcaattt 35463  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 25684 - 25773
Alignment:
Q  148 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattctttt 241  Q
    |||||||||| | ||| |||  |||||||||||||| |||||||    |||||||| |||||||||  || | |||||||||||||||| ||||    
T  25684 gaggtattcttccatgatcacgagaccaaatcaataatgtttgg----acacacacgtaaaaagattttcatcaaaatattcaatcattttttt 25773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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