View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_97 (Length: 346)
Name: NF0812_low_97
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_97 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 39 - 333
Target Start/End: Original strand, 54347899 - 54348193
Alignment:
| Q |
39 |
tatataatgtatatatttacctccatacatattgatacatagctagatagtaaacatgcatggaaatgtatggacattaactaactatatgtatgttatt |
138 |
Q |
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| T |
54347899 |
tatataatgtatatatttacctccatacatattgatacatagctagatagtaaacatgcatggaaatgtatggacattaactaactatatgtatgttatt |
54347998 |
T |
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| Q |
139 |
ttatgttatgcagatattggggtgatgagtggagcagtgatatacataaaaagagacctcaaactatctaatgtccaaattgaaatcctagtaggcatca |
238 |
Q |
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| T |
54347999 |
ttatgttatgcagatattggggtgatgagtggagcagtgatatacataaaaagagacctcaaactatctaatgtccaaattgaaatcctagtaggcatca |
54348098 |
T |
|
| Q |
239 |
tcaaccttttctccttaataggttcctgcctcgctggccgaacctctgactggattggtcgccgttacaccatcgtccttgccggctccatcttc |
333 |
Q |
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| T |
54348099 |
tcaaccttttctccttaataggttcctgcctcgccggccgaacctctgactggattggtcgccgttacaccatcgtccttgctggctccatcttc |
54348193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 26152712 - 26152768
Alignment:
| Q |
150 |
agatattggggtgatgagtggagcagtgatatacataaaaagagacctcaaactatc |
206 |
Q |
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| T |
26152712 |
agatattggtgttatgagtggagcagcaatctacataaaaagagaccttaaagtatc |
26152768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 27318767 - 27318815
Alignment:
| Q |
149 |
cagatattggggtgatgagtggagcagtgatatacataaaaagagacct |
197 |
Q |
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| T |
27318767 |
cagatattggtgtgatgagtggagcagccatctatataaaaagagacct |
27318815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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