View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_98 (Length: 343)
Name: NF0812_low_98
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_98 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 48870068 - 48869763
Alignment:
| Q |
9 |
agcagagaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtatgttctttcgtctg |
108 |
Q |
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| T |
48870068 |
agcacagaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtacgttctttcgtctg |
48869969 |
T |
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| Q |
109 |
tcttcaatgcgcaaaaataattgtcctcgtagcaatccaattgatatattcgtctttattttttctcattttattgagtatgtttgagtaggttatagca |
208 |
Q |
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| T |
48869968 |
tcttcaatgtgcaaaaatagttgtcctcatagcaatccaattgatatattcgtctttattttttctcattttattgagtatgtttgagtaggttatagca |
48869869 |
T |
|
| Q |
209 |
attcaaagttgagattaatattatgatatgaaaatgaaaattatactttgtgttatttgaaaacttcctcaaatactcttcctatgattagtctaggggt |
308 |
Q |
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| T |
48869868 |
attcaatgttgagattaatattatgatatgaaaatgaaaattatactttctattatttgaaaacttcctcaaatactcttcctatgattagtctaggggt |
48869769 |
T |
|
| Q |
309 |
gaatgt |
314 |
Q |
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| T |
48869768 |
gaatgt |
48869763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 2905126 - 2905338
Alignment:
| Q |
14 |
agaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtatgttctttcgtctgtcttc |
113 |
Q |
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| T |
2905126 |
agaagaagcctcgagttgtttggtcggctgacttacaccgcaagtttcttgctgctgttaaacaattaggctttgaaagtatgttgttccctcaatcttc |
2905225 |
T |
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| Q |
114 |
aatgcgcaaaaataattgtcctcgtagcaat--ccaattgatatattcgtctttattttttctcattttattgagtatgtttgagtaggttatagcaatt |
211 |
Q |
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| T |
2905226 |
aatgcgcaaaaacagttgtcatcgtaacttttatcaatttttatattcctctttatttgttcacatttaatcaag-atatttgagtaggttatagcaatt |
2905324 |
T |
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| Q |
212 |
caaagttgagatta |
225 |
Q |
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| T |
2905325 |
aaatgttgagatta |
2905338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 2889220 - 2889307
Alignment:
| Q |
201 |
ttatagcaattcaaagttgagattaatattatgatatgaaaatgaaaattatactttgtgttatttgaaaacttcctcaaatactctt |
288 |
Q |
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| T |
2889220 |
ttatagcaatccaatgttgagattaatatcatgatatgaaaattaaaattctactttgtattatttgaagacttcctcaaatattctt |
2889307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 2893617 - 2893728
Alignment:
| Q |
14 |
agaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtatgttctttcgtctgtcttc |
113 |
Q |
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|||||||||||||| |||||||||| ||| ||||||||||||||| ||| || |||||| |||||||| |||| |||| |||||| | ||| ||||| |
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| T |
2893617 |
agaagaagcctcgaactgtttggtccgctgatttacaccgcaagtttgttgttgcggttaatcaattaggcgttgacagtacgttcttacctctttcttc |
2893716 |
T |
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| Q |
114 |
aatgcgcaaaaa |
125 |
Q |
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||| |||||||| |
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| T |
2893717 |
aatccgcaaaaa |
2893728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 2889029 - 2889132
Alignment:
| Q |
14 |
agaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtatgttctttcgtctgtcttc |
113 |
Q |
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|||||||||||||| ||||||||| ||| |||||| |||||||| |||||| ||||||| |||||||| |||| |||| |||||| | ||| ||||| |
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| T |
2889029 |
agaagaagcctcgaactgtttggtctgctgatttacacggcaagtttgttgctgctgttaatcaattaggcgttgacagtacgttcttccctctttcttc |
2889128 |
T |
|
| Q |
114 |
aatg |
117 |
Q |
| |
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|||| |
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| T |
2889129 |
aatg |
2889132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 2893811 - 2893899
Alignment:
| Q |
201 |
ttatagcaattcaaagttgagattaatattatgatatgaaaatgaaaattatactttgtgttatttgaaaacttcctcaaatactcttcc |
290 |
Q |
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|||||||||| || || ||||||||||| |||||||| |||| |||||| |||||||| ||||||||| |||| |||||||| |||||| |
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| T |
2893811 |
ttatagcaatcaaatgtcgagattaatatcatgatatgcaaataaaaattctactttgtattatttgaagactt-ctcaaatattcttcc |
2893899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 49060714 - 49060627
Alignment:
| Q |
14 |
agaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtatgttctt |
101 |
Q |
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||||||||||||| ||||||||||| || | |||||||||||| |||||| ||||||| | ||||||||||| ||||||||||| |
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| T |
49060714 |
agaagaagcctcgggttgtttggtctgtggagctgcaccgcaagtttgttgctgctgttaatcagttaggcattgacagtatgttctt |
49060627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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