View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_99 (Length: 343)
Name: NF0812_low_99
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_99 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 314
Target Start/End: Complemental strand, 48870069 - 48869763
Alignment:
| Q |
8 |
cagcacagaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtatgttctttcgtct |
107 |
Q |
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| T |
48870069 |
cagcacagaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtacgttctttcgtct |
48869970 |
T |
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| Q |
108 |
gtcttcaatgcgcaaaaataattgtcctcgtagcaatccaattgatatattcgtctttattttttctcattttattgagtatgtttgagtaggttatagc |
207 |
Q |
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| T |
48869969 |
gtcttcaatgtgcaaaaatagttgtcctcatagcaatccaattgatatattcgtctttattttttctcattttattgagtatgtttgagtaggttatagc |
48869870 |
T |
|
| Q |
208 |
aattcaaagttgagattaatattatgatatgaaaatgaaaattatactttgtgttatttgaaaacttcctcaaatactcttcctatgattagtctagggg |
307 |
Q |
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| T |
48869869 |
aattcaatgttgagattaatattatgatatgaaaatgaaaattatactttctattatttgaaaacttcctcaaatactcttcctatgattagtctagggg |
48869770 |
T |
|
| Q |
308 |
tgaatgt |
314 |
Q |
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||||||| |
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| T |
48869769 |
tgaatgt |
48869763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 2905122 - 2905338
Alignment:
| Q |
10 |
gcacagaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtatgttctttcgtctgt |
109 |
Q |
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| T |
2905122 |
gcacagaagaagcctcgagttgtttggtcggctgacttacaccgcaagtttcttgctgctgttaaacaattaggctttgaaagtatgttgttccctcaat |
2905221 |
T |
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| Q |
110 |
cttcaatgcgcaaaaataattgtcctcgtagcaat--ccaattgatatattcgtctttattttttctcattttattgagtatgtttgagtaggttatagc |
207 |
Q |
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| T |
2905222 |
cttcaatgcgcaaaaacagttgtcatcgtaacttttatcaatttttatattcctctttatttgttcacatttaatcaag-atatttgagtaggttatagc |
2905320 |
T |
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| Q |
208 |
aattcaaagttgagatta |
225 |
Q |
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|||| || |||||||||| |
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| T |
2905321 |
aattaaatgttgagatta |
2905338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 2889220 - 2889307
Alignment:
| Q |
201 |
ttatagcaattcaaagttgagattaatattatgatatgaaaatgaaaattatactttgtgttatttgaaaacttcctcaaatactctt |
288 |
Q |
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|||||||||| ||| |||||||||||||| ||||||||||||| |||||| |||||||| ||||||||| ||||||||||||| |||| |
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| T |
2889220 |
ttatagcaatccaatgttgagattaatatcatgatatgaaaattaaaattctactttgtattatttgaagacttcctcaaatattctt |
2889307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 2893616 - 2893728
Alignment:
| Q |
13 |
cagaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtatgttctttcgtctgtctt |
112 |
Q |
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||||||||||||||| |||||||||| ||| ||||||||||||||| ||| || |||||| |||||||| |||| |||| |||||| | ||| |||| |
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| T |
2893616 |
cagaagaagcctcgaactgtttggtccgctgatttacaccgcaagtttgttgttgcggttaatcaattaggcgttgacagtacgttcttacctctttctt |
2893715 |
T |
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| Q |
113 |
caatgcgcaaaaa |
125 |
Q |
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|||| |||||||| |
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| T |
2893716 |
caatccgcaaaaa |
2893728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 2889028 - 2889132
Alignment:
| Q |
13 |
cagaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtatgttctttcgtctgtctt |
112 |
Q |
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||||||||||||||| ||||||||| ||| |||||| |||||||| |||||| ||||||| |||||||| |||| |||| |||||| | ||| |||| |
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| T |
2889028 |
cagaagaagcctcgaactgtttggtctgctgatttacacggcaagtttgttgctgctgttaatcaattaggcgttgacagtacgttcttccctctttctt |
2889127 |
T |
|
| Q |
113 |
caatg |
117 |
Q |
| |
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||||| |
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| T |
2889128 |
caatg |
2889132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 2893811 - 2893899
Alignment:
| Q |
201 |
ttatagcaattcaaagttgagattaatattatgatatgaaaatgaaaattatactttgtgttatttgaaaacttcctcaaatactcttcc |
290 |
Q |
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|||||||||| || || ||||||||||| |||||||| |||| |||||| |||||||| ||||||||| |||| |||||||| |||||| |
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| T |
2893811 |
ttatagcaatcaaatgtcgagattaatatcatgatatgcaaataaaaattctactttgtattatttgaagactt-ctcaaatattcttcc |
2893899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 49060720 - 49060627
Alignment:
| Q |
8 |
cagcacagaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtatgttctt |
101 |
Q |
| |
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|||| |||||||||||||| ||||||||||| || | |||||||||||| |||||| ||||||| | ||||||||||| ||||||||||| |
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| T |
49060720 |
cagctcagaagaagcctcgggttgtttggtctgtggagctgcaccgcaagtttgttgctgctgttaatcagttaggcattgacagtatgttctt |
49060627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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