View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0813_high_4 (Length: 615)

Name: NF0813_high_4
Description: NF0813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0813_high_4
NF0813_high_4
[»] chr2 (1 HSPs)
chr2 (11-588)||(16704457-16705033)
[»] chr8 (4 HSPs)
chr8 (142-198)||(6466849-6466905)
chr8 (92-126)||(33852150-33852184)
chr8 (69-125)||(30334779-30334835)
chr8 (90-142)||(34308825-34308877)
[»] chr7 (4 HSPs)
chr7 (90-196)||(43776180-43776291)
chr7 (90-126)||(2193476-2193512)
chr7 (61-125)||(3305209-3305273)
chr7 (90-126)||(18833506-18833542)
[»] chr4 (1 HSPs)
chr4 (90-123)||(5810057-5810090)
[»] scaffold1519 (1 HSPs)
scaffold1519 (90-142)||(1591-1643)
[»] scaffold0217 (1 HSPs)
scaffold0217 (90-142)||(514-566)
[»] scaffold0168 (1 HSPs)
scaffold0168 (90-126)||(2962-2998)
[»] scaffold0002 (1 HSPs)
scaffold0002 (90-126)||(154522-154558)
[»] chr6 (4 HSPs)
chr6 (53-141)||(1991758-1991846)
chr6 (90-126)||(7912530-7912566)
chr6 (90-126)||(27334313-27334349)
chr6 (90-126)||(27395053-27395089)
[»] chr5 (1 HSPs)
chr5 (90-126)||(34867998-34868034)
[»] chr3 (1 HSPs)
chr3 (90-126)||(13150444-13150480)


Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 11 - 588
Target Start/End: Original strand, 16704457 - 16705033
Alignment:
Q  11 gatgaactggctttcacgttcttctactatatatgttctatctaacatctcagactactttaagtactgttgaatgcttccacaaatcaacatgagtctt 110  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||    
T  16704457 gatgaactggctttcacgttcttctattatatatgttctatctaacatctcagactactttaagtattgttgaatgcttccaccaatcaacatgtgtctt 16704556  T
Q  111 ttaagcgtgttttgtctccattcacatgcttaaaacttcctagaagatcatccattccaaaattgaaccaagtcaagtacacttaaataaattactctta 210  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16704557 tttagcgtgttttgtctccattcacatgcttaaaacttcctagaagatcatccattccaaaattgaaccaagtcaagtacacttaaataaattgctctta 16704656  T
Q  211 caatatagactaccggaaagaataagcatctattttgatataggcagtacccatcaattcttatgtgaattcgttcattcttgagctgctcattgaacat 310  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16704657 caatatagactaccggaaagaataagcaactattttggtataggcagtacccatcaattcttatctgaattcgttcattcttgagctgctcattgaacat 16704756  T
Q  311 gcatgcctatcagcgatcactcctcgcccttgtagtcttaggcgtcacaacctacaagtaagaaatgttggatctaaactcagttatgcgacatgattgc 410  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16704757 gcatgcctatcagcaatcactcctcgcccttgtagccttaggcgtcacaacttacaagtaagaaatgttggatctaaactcag-tatgcgacatgattgc 16704855  T
Q  411 caatttgtttgagtggtgtgaataacttcgtatatttattcttctcggtttgtgcttgtctccaaggtaaatcttaggctttgttcaattagcatgatcc 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16704856 caatttgtttgagtggtgtgaataacttcgtatatttattcttctcggtttgtgcttgtctccaaggtaaatcttaggctttgttcaattagcatgatcc 16704955  T
Q  511 ttttggtctcttttgatttgcaataagtgaaggccttaccttactaatattactcaaacagttaccgggtgttctaca 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16704956 ttttggtctcttttgatttgcaataagtgaaggccttaccttactaatattactcaaacagttaccgggtgttctaca 16705033  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 6466905 - 6466849
Alignment:
Q  142 aaaacttcctagaagatcatccattccaaaattgaaccaagtcaagtacacttaaat 198  Q
    ||||||||| ||||| ||| |||| |||||||||  |||||||||||||||||||||    
T  6466905 aaaacttccaagaaggtcacccataccaaaattgctccaagtcaagtacacttaaat 6466849  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 33852150 - 33852184
Alignment:
Q  92 acaaatcaacatgagtcttttaagcgtgttttgtc 126  Q
    ||||||||||||||||||||| |||||||||||||    
T  33852150 acaaatcaacatgagtctttttagcgtgttttgtc 33852184  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 30334779 - 30334835
Alignment:
Q  69 tttaagtactgttgaatgcttccacaaatcaacatgagtcttttaagcgtgttttgt 125  Q
    |||||||| ||| || || | ||||||||||||||||||||||| | ||||||||||    
T  30334779 tttaagtattgtcgattgatcccacaaatcaacatgagtctttttaacgtgttttgt 30334835  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 34308825 - 34308877
Alignment:
Q  90 ccacaaatcaacatgagtcttttaagcgtgttttgtctccattcacatgctta 142  Q
    ||||||| ||||| ||||||||| |||||||||||||  || |||||||||||    
T  34308825 ccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcacatgctta 34308877  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 43776180 - 43776291
Alignment:
Q  90 ccacaaatcaacatgagtcttttaagcgtgttttgtctccattcacatgctta-----aaacttcctagaagatcatccattccaaaattgaaccaagtc 184  Q
    ||||||| ||||| ||||||||| |||||||||||||| ||||| || |||||     ||||||||  | || ||| ||||||||||||||  |||||||    
T  43776180 ccacaaaccaacacgagtcttttcagcgtgttttgtcttcattcgcacgcttactggaaaacttccccgcaggtcacccattccaaaattgctccaagtc 43776279  T
Q  185 aagtacacttaa 196  Q
    ||| || |||||    
T  43776280 aagcacgcttaa 43776291  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 2193512 - 2193476
Alignment:
Q  90 ccacaaatcaacatgagtcttttaagcgtgttttgtc 126  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  2193512 ccacaaatcaacacgagtcttttcagcgtgttttgtc 2193476  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 3305209 - 3305273
Alignment:
Q  61 cagactactttaagtactgttgaatgcttccacaaatcaacatgagtcttttaagcgtgttttgt 125  Q
    ||||| |||||||||| || ||| || | | ||||||||||| ||||||||| ||||||||||||    
T  3305209 cagacgactttaagtattgctgactgatcctacaaatcaacacgagtcttttcagcgtgttttgt 3305273  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 18833542 - 18833506
Alignment:
Q  90 ccacaaatcaacatgagtcttttaagcgtgttttgtc 126  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  18833542 ccacaaatcaacacgagtcttttcagcgtgttttgtc 18833506  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 5810090 - 5810057
Alignment:
Q  90 ccacaaatcaacatgagtcttttaagcgtgtttt 123  Q
    ||||||||||||||||||||||| ||||||||||    
T  5810090 ccacaaatcaacatgagtcttttcagcgtgtttt 5810057  T

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Target: scaffold1519 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 1591 - 1643
Alignment:
Q  90 ccacaaatcaacatgagtcttttaagcgtgttttgtctccattcacatgctta 142  Q
    ||||||| ||||| ||||||||| |||||||||||||  || |||||||||||    
T  1591 ccacaaaccaacacgagtctttttagcgtgttttgtcctcactcacatgctta 1643  T

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Target: scaffold0217 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 566 - 514
Alignment:
Q  90 ccacaaatcaacatgagtcttttaagcgtgttttgtctccattcacatgctta 142  Q
    ||||||| ||||| ||||||||| |||||||||||||  || |||||||||||    
T  566 ccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcacatgctta 514  T

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Target: scaffold0168 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 2998 - 2962
Alignment:
Q  90 ccacaaatcaacatgagtcttttaagcgtgttttgtc 126  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  2998 ccacaaatcaacacgagtcttttcagcgtgttttgtc 2962  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 154558 - 154522
Alignment:
Q  90 ccacaaatcaacatgagtcttttaagcgtgttttgtc 126  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  154558 ccacaaatcaacacgagtcttttcagcgtgttttgtc 154522  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 1991846 - 1991758
Alignment:
Q  53 taacatctcagactactttaagtactgttgaatgcttccacaaatcaacatgagtcttttaagcgtgttttgtctccattcacatgctt 141  Q
    |||||||||||   ||||||| || |||||| || | ||||||||||||| |||| |||| |||||  ||||||| || ||||||||||    
T  1991846 taacatctcagttgactttaaatattgttgactgatcccacaaatcaacacgagttttttcagcgtactttgtcttcactcacatgctt 1991758  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 7912566 - 7912530
Alignment:
Q  90 ccacaaatcaacatgagtcttttaagcgtgttttgtc 126  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  7912566 ccacaaaccaacatgagtcttttcagcgtgttttgtc 7912530  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 27334349 - 27334313
Alignment:
Q  90 ccacaaatcaacatgagtcttttaagcgtgttttgtc 126  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  27334349 ccacaaatcaacacgagtcttttcagcgtgttttgtc 27334313  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 27395089 - 27395053
Alignment:
Q  90 ccacaaatcaacatgagtcttttaagcgtgttttgtc 126  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  27395089 ccacaaatcaacacgagtcttttcagcgtgttttgtc 27395053  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 34868034 - 34867998
Alignment:
Q  90 ccacaaatcaacatgagtcttttaagcgtgttttgtc 126  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  34868034 ccacaaatcaacacgagtctttttagcgtgttttgtc 34867998  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 13150444 - 13150480
Alignment:
Q  90 ccacaaatcaacatgagtcttttaagcgtgttttgtc 126  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  13150444 ccacaaatcaacacgagtcttttcagcgtgttttgtc 13150480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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